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Sample GSM230558 Query DataSets for GSM230558
Status Public on Jan 29, 2008
Title 304_array
Sample type RNA
 
Source name Peripheral blood
Organism Homo sapiens
Characteristics TAA; training set
Extracted molecule total RNA
Extraction protocol PAXgene tube and Qiagen Preanalytics Blood RNA kit
Label digoxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Gene expression data from peripheral blood of TAA/normal individuals using Applied Biosystems AB1700 Whole Genome Microarray
Data processing Quantile normalization of training samples using ABarray bioconductor package. Testing samples are quantile normalized to the profile of training samples.
 
Submission date Sep 19, 2007
Last update date Jan 29, 2008
Contact name Catalin Barbacioru
E-mail(s) catalin@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2986
Series (1)
GSE9106 Gene Expression Signature in Peripheral Blood Detects Thoracic Aortic Aneurysm

Data table header descriptions
ID_REF Probe ID
VALUE Quantile normalized signal intensity
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected

Data table
ID_REF VALUE S/N
100002 81107.12787 65.9
100003 310.0090164 -2.1
100027 117.657377 1.4
100036 995.1065574 0.1
100037 15024.64426 49.1
100039 3371.3 8.2
100044 274.4795082 1.3
100045 468.4295082 0.1
100051 263.9770492 -1
100052 396.642623 1.7
100057 2295.309016 4.9
100058 21190.35902 50.2
100060 342.2540984 0.4
100062 872.6622951 1.8
100064 640.6680328 1.4
100079 8994.027869 23.3
100089 1693.713115 5.2
100093 398.4278689 0.3
100095 125.6786885 -3.7
100100 17458.45246 63

Total number of rows: 32878

Table truncated, full table size 743 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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