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Sample GSM230562 Query DataSets for GSM230562
Status Public on Jan 29, 2008
Title 314_array
Sample type RNA
 
Source name Peripheral blood
Organism Homo sapiens
Characteristics TAA; training set
Extracted molecule total RNA
Extraction protocol PAXgene tube and Qiagen Preanalytics Blood RNA kit
Label digoxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Gene expression data from peripheral blood of TAA/normal individuals using Applied Biosystems AB1700 Whole Genome Microarray
Data processing Quantile normalization of training samples using ABarray bioconductor package. Testing samples are quantile normalized to the profile of training samples.
 
Submission date Sep 19, 2007
Last update date Jan 29, 2008
Contact name Catalin Barbacioru
E-mail(s) catalin@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2986
Series (1)
GSE9106 Gene Expression Signature in Peripheral Blood Detects Thoracic Aortic Aneurysm

Data table header descriptions
ID_REF Probe ID
VALUE Quantile normalized signal intensity
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected

Data table
ID_REF VALUE S/N
100002 47751.44918 68.7
100003 702.0868852 1.8
100027 247.7704918 -2.7
100036 3985.778689 1
100037 9283.159016 21.3
100039 4370.655738 8.5
100044 289.9065574 -2.2
100045 206.3737705 -0.1
100051 302.495082 -3.6
100052 161.4590164 -0.8
100057 2047.939344 1.9
100058 19805.68361 31.6
100060 356.257377 1.5
100062 1432.319672 2.6
100064 1334.386066 3.5
100079 7836.142623 21.1
100089 464.2327869 0.6
100093 157.7967213 -2.5
100095 317.3196721 -0.8
100100 9065.3 23.2

Total number of rows: 32878

Table truncated, full table size 742 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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