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Sample GSM230564 Query DataSets for GSM230564
Status Public on Jan 29, 2008
Title 319_array
Sample type RNA
 
Source name Peripheral blood
Organism Homo sapiens
Characteristics TAA; training set
Extracted molecule total RNA
Extraction protocol PAXgene tube and Qiagen Preanalytics Blood RNA kit
Label digoxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Gene expression data from peripheral blood of TAA/normal individuals using Applied Biosystems AB1700 Whole Genome Microarray
Data processing Quantile normalization of training samples using ABarray bioconductor package. Testing samples are quantile normalized to the profile of training samples.
 
Submission date Sep 19, 2007
Last update date Jan 29, 2008
Contact name Catalin Barbacioru
E-mail(s) catalin@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2986
Series (1)
GSE9106 Gene Expression Signature in Peripheral Blood Detects Thoracic Aortic Aneurysm

Data table header descriptions
ID_REF Probe ID
VALUE Quantile normalized signal intensity
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected

Data table
ID_REF VALUE S/N
100002 82963.35738 73.9
100003 230.3745902 -1.4
100027 336.6188525 -1.4
100036 1031.922131 1.1
100037 18286.1 56.3
100039 5587.493443 20.5
100044 297.8680328 -0.6
100045 449.8377049 -0.1
100051 359.6360656 0.5
100052 353.2065574 1.4
100057 1682.978689 2.8
100058 19631.4 51.1
100060 393.5327869 0.6
100062 1577.401639 6.1
100064 617.4803279 1.8
100079 7457.890164 26.8
100089 1771.377049 5.4
100093 268.052459 -0.2
100095 407.747541 1.7
100100 16145.3459 54.3

Total number of rows: 32878

Table truncated, full table size 744 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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