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Sample GSM230571 Query DataSets for GSM230571
Status Public on Jan 29, 2008
Title 338_array
Sample type RNA
 
Source name Peripheral blood
Organism Homo sapiens
Characteristics TAA; training set
Extracted molecule total RNA
Extraction protocol PAXgene tube and Qiagen Preanalytics Blood RNA kit
Label digoxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Gene expression data from peripheral blood of TAA/normal individuals using Applied Biosystems AB1700 Whole Genome Microarray
Data processing Quantile normalization of training samples using ABarray bioconductor package. Testing samples are quantile normalized to the profile of training samples.
 
Submission date Sep 19, 2007
Last update date Jan 29, 2008
Contact name Catalin Barbacioru
E-mail(s) catalin@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2986
Series (1)
GSE9106 Gene Expression Signature in Peripheral Blood Detects Thoracic Aortic Aneurysm

Data table header descriptions
ID_REF Probe ID
VALUE Quantile normalized signal intensity
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected

Data table
ID_REF VALUE S/N
100002 42575.72459 65.3
100003 250.2155738 1.3
100027 301.257377 -0.6
100036 1959.42623 4.2
100037 16651.29344 56.7
100039 4428.911475 18
100044 163.3393443 -1.2
100045 465.8836066 0.4
100051 336.5680328 -0.9
100052 262.2770492 -1.1
100057 2260.414754 4.6
100058 24410.41148 45.1
100060 562.5713115 0.6
100062 1307.704918 1.8
100064 339.857377 0.1
100079 12714.6541 53.4
100089 2344.4 9.8
100093 255.157377 -0.1
100095 351.45 -2.5
100100 20078.56557 82.1

Total number of rows: 32878

Table truncated, full table size 744 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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