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Sample GSM230591 Query DataSets for GSM230591
Status Public on Jan 29, 2008
Title 443_array
Sample type RNA
 
Source name Peripheral blood
Organism Homo sapiens
Characteristics Control; training set
Extracted molecule total RNA
Extraction protocol PAXgene tube and Qiagen Preanalytics Blood RNA kit
Label digoxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Gene expression data from peripheral blood of TAA/normal individuals using Applied Biosystems AB1700 Whole Genome Microarray
Data processing Quantile normalization of training samples using ABarray bioconductor package. Testing samples are quantile normalized to the profile of training samples.
 
Submission date Sep 19, 2007
Last update date Jan 29, 2008
Contact name Catalin Barbacioru
E-mail(s) catalin@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2986
Series (1)
GSE9106 Gene Expression Signature in Peripheral Blood Detects Thoracic Aortic Aneurysm

Data table header descriptions
ID_REF Probe ID
VALUE Quantile normalized signal intensity
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected

Data table
ID_REF VALUE S/N
100002 85356.32459 76.2
100003 598.7606557 3.1
100027 314.1622951 0
100036 1896.318033 2.7
100037 18027.91475 30.6
100039 4560.298361 24.4
100044 149.7491803 -3.3
100045 451.1368852 -0.7
100051 307.704918 0.2
100052 493.3803279 1.6
100057 1735.080328 4.5
100058 22022.3918 49.2
100060 484.2901639 0.9
100062 1971.536066 3.5
100064 1307.444262 4.2
100079 10596.9 46.2
100089 2189.791803 7.8
100093 478.6885246 -0.2
100095 203.3696721 -0.8
100100 18872.06066 68.1

Total number of rows: 32878

Table truncated, full table size 743 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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