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Sample GSM230616 Query DataSets for GSM230616
Status Public on Jan 29, 2008
Title 284_array
Sample type RNA
 
Source name Peripheral blood
Organism Homo sapiens
Characteristics TAA; testing set
Extracted molecule total RNA
Extraction protocol PAXgene tube and Qiagen Preanalytics Blood RNA kit
Label digoxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Gene expression data from peripheral blood of TAA/normal individuals using Applied Biosystems AB1700 Whole Genome Microarray
Data processing Quantile normalization of training samples using ABarray bioconductor package. Testing samples are quantile normalized to the profile of training samples.
 
Submission date Sep 19, 2007
Last update date Jan 29, 2008
Contact name Catalin Barbacioru
E-mail(s) catalin@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2986
Series (1)
GSE9106 Gene Expression Signature in Peripheral Blood Detects Thoracic Aortic Aneurysm

Data table header descriptions
ID_REF Probe ID
VALUE Quantile normalized signal intensity
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected

Data table
ID_REF VALUE S/N
100002 32412.79001 67.2
100003 242.1333484 0.3
100027 522.6718524 -0.3
100036 2410.268326 0.4
100037 9823.126386 17.3
100039 1237.83513 2.4
100044 252.5818841 -0.5
100045 551.794024 -1.1
100051 224.5306862 -0.2
100052 109.8428478 -2.3
100057 2389.902631 2.9
100058 22625.8377 54.6
100060 684.5704483 -1.1
100062 617.9791283 1.9
100064 387.4727608 -0.3
100079 2818.272869 5.2
100089 1730.709006 2.2
100093 106.2737465 1
100095 708.5273264 1.4
100100 12543.58328 29

Total number of rows: 32878

Table truncated, full table size 744 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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