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Sample GSM230998 Query DataSets for GSM230998
Status Public on Sep 22, 2007
Title aP2-nSREBP1c_WT2
Sample type RNA
 
Source name Epididymal Fat pads, WT2
Organism Mus musculus
Characteristics Strain: WT C57BL6;SJL
Gender: male
Age: 10 weeks
Tissue: Epididymal white adipose tissue
Extracted molecule total RNA
Extraction protocol Tri Reagent followed by DNase treatment and reextraction with phenol
Label biotin
Label protocol According to manufacturer's instructions (Affymetrix)
 
Hybridization protocol According to manufacturer's instructions (Affymetrix)
Scan protocol According to manufacturer's instructions (Affymetrix)
Description Part of a 3 WT vs. 3 aP2-nSrebp1c expression series for identifying gene expression changes in white adipose tissue of lipodystrophic mice
Data processing MAS5.0 protocol
 
Submission date Sep 21, 2007
Last update date Aug 28, 2018
Contact name Yaacov Barak
E-mail(s) yaki.barak@jax.org
Organization name The Jackson Laboratory
Street address 600 Main Street
City Bar Harbor
State/province ME
ZIP/Postal code 04609
Country USA
 
Platform ID GPL1261
Series (2)
GSE9130 aP2-nSREBP1c_white_Adipose_Tissue_expression_differentials
GSE9132 Identifying gene expression changes in adipose tissue of lipodystrophic mice
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated signal intensity
ABS_CALL Call in an absolute analysis that indicates transcript presence
DETECTION P-VALUE Indicates significance of detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 151 P 0.001593
AFFX-BioB-M_at 225.7 P 0.000297
AFFX-BioB-3_at 146.4 P 0.002867
AFFX-BioC-5_at 337.8 P 0.000052
AFFX-BioC-3_at 220.7 P 0.000052
AFFX-BioDn-5_at 330.7 P 0.000044
AFFX-BioDn-3_at 1557.1 P 0.000095
AFFX-CreX-5_at 2839.3 P 0.000044
AFFX-CreX-3_at 4626.2 P 0.000044
AFFX-DapX-5_at 7.4 A 0.368438
AFFX-DapX-M_at 16.3 A 0.382599
AFFX-DapX-3_at 7.2 A 0.455413
AFFX-LysX-5_at 1.3 A 0.760937
AFFX-LysX-M_at 9.4 A 0.544587
AFFX-LysX-3_at 13.6 A 0.195266
AFFX-PheX-5_at 0.8 A 0.897835
AFFX-PheX-M_at 1.3 A 0.932322
AFFX-PheX-3_at 12.5 A 0.455413
AFFX-ThrX-5_at 3.8 A 0.672921
AFFX-ThrX-M_at 9.3 A 0.396911

Total number of rows: 45101

Table truncated, full table size 1201 Kbytes.




Supplementary file Size Download File type/resource
GSM230998.CEL.gz 4.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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