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Sample GSM231000 Query DataSets for GSM231000
Status Public on Sep 22, 2007
Title aP2-nSREBP1c_MUT1
Sample type RNA
 
Source name Epididymal Fat pads, MUT1
Organism Mus musculus
Characteristics Strain: aP2-nSrebp1c Tg C57BL6;SJL
Gender: male
Age: 10 weeks
Tissue: Epididymal white adipose tissue
Extracted molecule total RNA
Extraction protocol Tri Reagent followed by DNase treatment and reextraction with phenol
Label biotin
Label protocol According to manufacturer's instructions (Affymetrix)
 
Hybridization protocol According to manufacturer's instructions (Affymetrix)
Scan protocol According to manufacturer's instructions (Affymetrix)
Description Part of a 3 WT vs. 3 aP2-nSrebp1c expression series for identifying gene expression changes in white adipose tissue of lipodystrophic mice
Data processing MAS5.0 protocol
 
Submission date Sep 21, 2007
Last update date Aug 28, 2018
Contact name Yaacov Barak
E-mail(s) yaki.barak@jax.org
Organization name The Jackson Laboratory
Street address 600 Main Street
City Bar Harbor
State/province ME
ZIP/Postal code 04609
Country USA
 
Platform ID GPL1261
Series (2)
GSE9130 aP2-nSREBP1c_white_Adipose_Tissue_expression_differentials
GSE9132 Identifying gene expression changes in adipose tissue of lipodystrophic mice
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated signal intensity
ABS_CALL Call in an absolute analysis that indicates transcript presence
DETECTION P-VALUE Indicates significance of detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 148.8 P 0.001248
AFFX-BioB-M_at 242 P 0.00034
AFFX-BioB-3_at 95 P 0.013811
AFFX-BioC-5_at 353.9 P 0.000095
AFFX-BioC-3_at 260.2 P 0.000044
AFFX-BioDn-5_at 440.7 P 0.000052
AFFX-BioDn-3_at 1734.8 P 0.000169
AFFX-CreX-5_at 3453.3 P 0.000044
AFFX-CreX-3_at 5321.5 P 0.000044
AFFX-DapX-5_at 6.4 A 0.631562
AFFX-DapX-M_at 2.1 A 0.749223
AFFX-DapX-3_at 4.8 A 0.749204
AFFX-LysX-5_at 1 A 0.843268
AFFX-LysX-M_at 13.7 A 0.672921
AFFX-LysX-3_at 20.3 A 0.116113
AFFX-PheX-5_at 1.9 A 0.916408
AFFX-PheX-M_at 0.8 A 0.953533
AFFX-PheX-3_at 8 A 0.559354
AFFX-ThrX-5_at 5 A 0.699394
AFFX-ThrX-M_at 10.1 A 0.659339

Total number of rows: 45101

Table truncated, full table size 1202 Kbytes.




Supplementary file Size Download File type/resource
GSM231000.CEL.gz 4.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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