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Sample GSM231002 Query DataSets for GSM231002
Status Public on Sep 22, 2007
Title aP2-nSREBP1c_MUT3
Sample type RNA
 
Source name Epididymal Fat pads, MUT3
Organism Mus musculus
Characteristics Strain: aP2-SREBP1c Tg - C57BL6;SJL
Gender: male
Age: 10 weeks
Tissue: Epididymal white adipose tissue
Extracted molecule total RNA
Extraction protocol Tri Reagent followed by DNase treatment and reextraction with phenol
Label biotin
Label protocol According to manufacturer's instructions (Affymetrix)
 
Hybridization protocol According to manufacturer's instructions (Affymetrix)
Scan protocol According to manufacturer's instructions (Affymetrix)
Description Part of a 3 WT vs. 3 aP2-nSrebp1c expression series for identifying gene expression changes in white adipose tissue of lipodystrophic mice
Data processing MAS5.0 protocol
 
Submission date Sep 21, 2007
Last update date Aug 28, 2018
Contact name Yaacov Barak
E-mail(s) yaki.barak@jax.org
Organization name The Jackson Laboratory
Street address 600 Main Street
City Bar Harbor
State/province ME
ZIP/Postal code 04609
Country USA
 
Platform ID GPL1261
Series (2)
GSE9130 aP2-nSREBP1c_white_Adipose_Tissue_expression_differentials
GSE9132 Identifying gene expression changes in adipose tissue of lipodystrophic mice
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated signal intensity
ABS_CALL Call in an absolute analysis that indicates transcript presence
DETECTION P-VALUE Indicates significance of detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 148.2 P 0.001248
AFFX-BioB-M_at 234.5 P 0.002023
AFFX-BioB-3_at 86 A 0.078002
AFFX-BioC-5_at 292.5 P 0.00007
AFFX-BioC-3_at 292.4 P 0.00006
AFFX-BioDn-5_at 336.9 P 0.00006
AFFX-BioDn-3_at 1650.9 P 0.000147
AFFX-CreX-5_at 3216.2 P 0.000044
AFFX-CreX-3_at 5066.1 P 0.000044
AFFX-DapX-5_at 17.1 A 0.095667
AFFX-DapX-M_at 18.6 A 0.250796
AFFX-DapX-3_at 3.9 A 0.760937
AFFX-LysX-5_at 1.3 A 0.737173
AFFX-LysX-M_at 13 A 0.631562
AFFX-LysX-3_at 26.5 P 0.042962
AFFX-PheX-5_at 3.6 A 0.749204
AFFX-PheX-M_at 2.4 A 0.904333
AFFX-PheX-3_at 7.7 A 0.712257
AFFX-ThrX-5_at 3.8 A 0.794268
AFFX-ThrX-M_at 1.4 A 0.737173

Total number of rows: 45101

Table truncated, full table size 1203 Kbytes.




Supplementary file Size Download File type/resource
GSM231002.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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