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Sample GSM231016 Query DataSets for GSM231016
Status Public on Sep 22, 2007
Title Pparg-ldi_MUT2
Sample type RNA
 
Source name Epididymal Fat pads, MUT2
Organism Mus musculus
Characteristics Strain: Ppargldi/+ C57BL6;129Sv
Gender: male
Age: 10 weeks
Tissue: Epididymal white adipose tissue
Extracted molecule total RNA
Extraction protocol Tri Reagent followed by DNase treatment and reextraction with phenol
Label biotin
Label protocol According to manufacturer's instructions (Affymetrix)
 
Hybridization protocol According to manufacturer's instructions (Affymetrix)
Scan protocol According to manufacturer's instructions (Affymetrix)
Description One of a 3 WT vs. 3 Ppargldi/+ expression series for identifying gene expression changes in white adipose tissue of lipodystrophic mice
Data processing MAS5.0 protocol
 
Submission date Sep 21, 2007
Last update date Aug 28, 2018
Contact name Yaacov Barak
E-mail(s) yaki.barak@jax.org
Organization name The Jackson Laboratory
Street address 600 Main Street
City Bar Harbor
State/province ME
ZIP/Postal code 04609
Country USA
 
Platform ID GPL1261
Series (2)
GSE9131 Pparg<ldi/+> white Adipose Tissue expression differentials
GSE9132 Identifying gene expression changes in adipose tissue of lipodystrophic mice
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated signal intensity
ABS_CALL Call in an absolute analysis that indicates transcript presence
DETECTION P-VALUE Indicates significance of detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 99.4 P 0.003212
AFFX-BioB-M_at 270.8 P 0.00011
AFFX-BioB-3_at 121.6 P 0.002556
AFFX-BioC-5_at 375.3 P 0.000095
AFFX-BioC-3_at 348.8 P 0.00006
AFFX-BioDn-5_at 415.4 P 0.000052
AFFX-BioDn-3_at 2084 P 0.00011
AFFX-CreX-5_at 5499.4 P 0.000044
AFFX-CreX-3_at 6937.6 P 0.000044
AFFX-DapX-5_at 18.8 P 0.030976
AFFX-DapX-M_at 7.1 A 0.617401
AFFX-DapX-3_at 10.6 A 0.574038
AFFX-LysX-5_at 10.7 A 0.425962
AFFX-LysX-M_at 4.5 A 0.712257
AFFX-LysX-3_at 24.1 P 0.01667
AFFX-PheX-5_at 1 A 0.921998
AFFX-PheX-M_at 2.1 A 0.9273
AFFX-PheX-3_at 9.6 A 0.440646
AFFX-ThrX-5_at 11 A 0.41138
AFFX-ThrX-M_at 2.7 A 0.814869

Total number of rows: 45101

Table truncated, full table size 1203 Kbytes.




Supplementary file Size Download File type/resource
GSM231016.CEL.gz 6.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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