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Sample GSM231018 Query DataSets for GSM231018
Status Public on Sep 22, 2007
Title Pparg-ldi_MUT3
Sample type RNA
 
Source name Epididymal Fat pads, MUT3
Organism Mus musculus
Characteristics Strain: Ppargldi/+ C57BL6;129Sv
Gender: male
Age: 10 weeks
Tissue: Epididymal white adipose tissue
Extracted molecule total RNA
Extraction protocol Tri Reagent followed by DNase treatment and reextraction with phenol
Label biotin
Label protocol According to manufacturer's instructions (Affymetrix)
 
Hybridization protocol According to manufacturer's instructions (Affymetrix)
Scan protocol According to manufacturer's instructions (Affymetrix)
Description One of a 3 WT vs. 3 Ppargldi/+ expression series for identifying gene expression changes in white adipose tissue of lipodystrophic mice
Data processing Mas5.0 protocol
 
Submission date Sep 21, 2007
Last update date Aug 28, 2018
Contact name Yaacov Barak
E-mail(s) yaki.barak@jax.org
Organization name The Jackson Laboratory
Street address 600 Main Street
City Bar Harbor
State/province ME
ZIP/Postal code 04609
Country USA
 
Platform ID GPL1261
Series (2)
GSE9131 Pparg<ldi/+> white Adipose Tissue expression differentials
GSE9132 Identifying gene expression changes in adipose tissue of lipodystrophic mice
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated signal intensity
ABS_CALL Call in an absolute analysis that indicates transcript presence
DETECTION P-VALUE Indicates significance of detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 101.7 P 0.002556
AFFX-BioB-M_at 319.2 P 0.000446
AFFX-BioB-3_at 96.9 P 0.003212
AFFX-BioC-5_at 388.5 P 0.000147
AFFX-BioC-3_at 368.2 P 0.000052
AFFX-BioDn-5_at 483.2 P 0.000052
AFFX-BioDn-3_at 2161.1 P 0.00011
AFFX-CreX-5_at 5520.7 P 0.000044
AFFX-CreX-3_at 7511.2 P 0.000044
AFFX-DapX-5_at 9.6 A 0.354441
AFFX-DapX-M_at 5.1 A 0.52976
AFFX-DapX-3_at 3.1 A 0.783476
AFFX-LysX-5_at 0.7 A 0.949771
AFFX-LysX-M_at 4 A 0.772364
AFFX-LysX-3_at 25.1 P 0.039661
AFFX-PheX-5_at 1.3 A 0.949771
AFFX-PheX-M_at 0.8 A 0.916408
AFFX-PheX-3_at 12.3 A 0.455413
AFFX-ThrX-5_at 16.3 A 0.239063
AFFX-ThrX-M_at 2.7 A 0.737191

Total number of rows: 45101

Table truncated, full table size 1205 Kbytes.




Supplementary file Size Download File type/resource
GSM231018.CEL.gz 6.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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