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Sample GSM231019 Query DataSets for GSM231019
Status Public on Sep 22, 2007
Title Pparg-ldi_WT1
Sample type RNA
 
Source name Epididymal Fat pads, WT1
Organism Mus musculus
Characteristics Strain: WT C57BL6;129Sv
Gender: male
Age: 10 weeks
Tissue: Epididymal white adipose tissue
Extracted molecule total RNA
Extraction protocol Tri Reagent followed by DNase treatment and reextraction with phenol
Label biotin
Label protocol According to manufacturer's instructions (Affymetrix)
 
Hybridization protocol According to manufacturer's instructions (Affymetrix)
Scan protocol According to manufacturer's instructions (Affymetrix)
Description One of a 3 WT vs. 3 Ppargldi/+ expression series for identifying gene expression changes in white adipose tissue of lipodystrophic mice
Data processing Mas5.0 protocol
 
Submission date Sep 21, 2007
Last update date Aug 28, 2018
Contact name Yaacov Barak
E-mail(s) yaki.barak@jax.org
Organization name The Jackson Laboratory
Street address 600 Main Street
City Bar Harbor
State/province ME
ZIP/Postal code 04609
Country USA
 
Platform ID GPL1261
Series (2)
GSE9131 Pparg<ldi/+> white Adipose Tissue expression differentials
GSE9132 Identifying gene expression changes in adipose tissue of lipodystrophic mice
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated signal intensity
ABS_CALL Call in an absolute analysis that indicates transcript presence
DETECTION P-VALUE Indicates significance of detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 134.2 P 0.00141
AFFX-BioB-M_at 231.5 P 0.000297
AFFX-BioB-3_at 105.2 P 0.002023
AFFX-BioC-5_at 392 P 0.000081
AFFX-BioC-3_at 389.1 P 0.000052
AFFX-BioDn-5_at 462.6 P 0.000052
AFFX-BioDn-3_at 2199 P 0.00007
AFFX-CreX-5_at 5925.6 P 0.000044
AFFX-CreX-3_at 7014.9 P 0.000044
AFFX-DapX-5_at 18.1 A 0.185131
AFFX-DapX-M_at 19.5 A 0.425962
AFFX-DapX-3_at 1.9 A 0.984817
AFFX-LysX-5_at 4.5 A 0.686277
AFFX-LysX-M_at 6.4 A 0.772364
AFFX-LysX-3_at 26.6 P 0.00762
AFFX-PheX-5_at 2.8 A 0.814869
AFFX-PheX-M_at 2.3 A 0.916408
AFFX-PheX-3_at 37.2 A 0.287743
AFFX-ThrX-5_at 3.2 A 0.794268
AFFX-ThrX-M_at 2.5 A 0.860518

Total number of rows: 45101

Table truncated, full table size 1202 Kbytes.




Supplementary file Size Download File type/resource
GSM231019.CEL.gz 6.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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