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Sample GSM231020 Query DataSets for GSM231020
Status Public on Sep 22, 2007
Title Pparg-ldi_WT2
Sample type RNA
 
Source name Epididymal Fat pads, WT2
Organism Mus musculus
Characteristics Strain: WT C57BL6;129Sv
Gender: male
Age: 10 weeks
Tissue: Epididymal white adipose tissue
Extracted molecule total RNA
Extraction protocol Tri Reagent followed by DNase treatment and reextraction with phenol
Label biotin
Label protocol According to manufacturer's instructions (Affymetrix)
 
Hybridization protocol According to manufacturer's instructions (Affymetrix)
Scan protocol According to manufacturer's instructions (Affymetrix)
Description One of a 3 WT vs. 3 Ppargldi/+ expression series for identifying gene expression changes in white adipose tissue of lipodystrophic mice
Data processing Mas5.0 protocol
 
Submission date Sep 21, 2007
Last update date Aug 28, 2018
Contact name Yaacov Barak
E-mail(s) yaki.barak@jax.org
Organization name The Jackson Laboratory
Street address 600 Main Street
City Bar Harbor
State/province ME
ZIP/Postal code 04609
Country USA
 
Platform ID GPL1261
Series (2)
GSE9131 Pparg<ldi/+> white Adipose Tissue expression differentials
GSE9132 Identifying gene expression changes in adipose tissue of lipodystrophic mice
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated signal intensity
ABS_CALL Call in an absolute analysis that indicates transcript presence
DETECTION P-VALUE Indicates significance of detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 143.6 P 0.001796
AFFX-BioB-M_at 367.4 P 0.000169
AFFX-BioB-3_at 133.1 P 0.001102
AFFX-BioC-5_at 453.8 P 0.00007
AFFX-BioC-3_at 453.8 P 0.00006
AFFX-BioDn-5_at 558.8 P 0.000052
AFFX-BioDn-3_at 2499 P 0.000081
AFFX-CreX-5_at 6510.1 P 0.000052
AFFX-CreX-3_at 8253.4 P 0.000044
AFFX-DapX-5_at 13 A 0.382599
AFFX-DapX-M_at 16.5 A 0.51489
AFFX-DapX-3_at 13.9 A 0.724854
AFFX-LysX-5_at 2.7 A 0.749223
AFFX-LysX-M_at 10.2 A 0.645547
AFFX-LysX-3_at 16.5 P 0.036569
AFFX-PheX-5_at 1.4 A 0.973889
AFFX-PheX-M_at 2.8 A 0.904333
AFFX-PheX-3_at 18 A 0.368438
AFFX-ThrX-5_at 3.6 A 0.960339
AFFX-ThrX-M_at 4.9 A 0.574038

Total number of rows: 45101

Table truncated, full table size 1203 Kbytes.




Supplementary file Size Download File type/resource
GSM231020.CEL.gz 6.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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