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Sample GSM231021 Query DataSets for GSM231021
Status Public on Sep 22, 2007
Title Pparg-ldi_WT3
Sample type RNA
 
Source name Epididymal Fat pads, WT3
Organism Mus musculus
Characteristics Strain: WT C57BL6;129Sv
Gender: male
Age: 10 weeks
Tissue: Epididymal white adipose tissue
Extracted molecule total RNA
Extraction protocol Tri Reagent followed by DNase treatment and reextraction with phenol
Label biotin
Label protocol According to manufacturer's instructions (Affymetrix)
 
Hybridization protocol According to manufacturer's instructions (Affymetrix)
Scan protocol According to manufacturer's instructions (Affymetrix)
Description One of a 3 WT vs. 3 Ppargldi/+ expression series for identifying gene expression changes in white adipose tissue of lipodystrophic mice
Data processing Mas5.0 protocol
 
Submission date Sep 21, 2007
Last update date Aug 28, 2018
Contact name Yaacov Barak
E-mail(s) yaki.barak@jax.org
Organization name The Jackson Laboratory
Street address 600 Main Street
City Bar Harbor
State/province ME
ZIP/Postal code 04609
Country USA
 
Platform ID GPL1261
Series (2)
GSE9131 Pparg<ldi/+> white Adipose Tissue expression differentials
GSE9132 Identifying gene expression changes in adipose tissue of lipodystrophic mice
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated signal intensity
ABS_CALL Call in an absolute analysis that indicates transcript presence
DETECTION P-VALUE Indicates significance of detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 98.4 P 0.000857
AFFX-BioB-M_at 259.2 P 0.000581
AFFX-BioB-3_at 116.9 P 0.000509
AFFX-BioC-5_at 322.5 P 0.000127
AFFX-BioC-3_at 284.7 P 0.000052
AFFX-BioDn-5_at 393.9 P 0.000052
AFFX-BioDn-3_at 1971.3 P 0.000095
AFFX-CreX-5_at 5566.5 P 0.000044
AFFX-CreX-3_at 6731.8 P 0.000044
AFFX-DapX-5_at 2 A 0.529762
AFFX-DapX-M_at 13.5 A 0.51489
AFFX-DapX-3_at 1.3 A 0.983338
AFFX-LysX-5_at 0.8 A 0.686277
AFFX-LysX-M_at 4.4 A 0.544587
AFFX-LysX-3_at 12.2 A 0.083592
AFFX-PheX-5_at 1 A 0.949771
AFFX-PheX-M_at 1.2 A 0.868639
AFFX-PheX-3_at 6.1 A 0.574038
AFFX-ThrX-5_at 4.1 A 0.772364
AFFX-ThrX-M_at 5.3 A 0.686277

Total number of rows: 45101

Table truncated, full table size 1203 Kbytes.




Supplementary file Size Download File type/resource
GSM231021.CEL.gz 6.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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