GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM234933
Query DataSets for GSM234933
Status
Public on Oct 06, 2008
Title
KNC_01
Sample type
RNA
Source name
skeletal muscle
Organism
Bos taurus
Characteristics
sample: ~2 years old Hanwoo (Korean native cattle) longissimus dorsi
Extracted molecule
polyA RNA
Extraction protocol
total RNA: Trizol reagent
poly A RNA: Qiagen oligotex resin
Label
biotin
Label protocol
Affymetrix protocol
Hybridization protocol
Affymetrix protocol
Scan protocol
Affymetrix protocol
Description
GeneChip Bovine Genome Array
Data processing
global scaling
Submission date
Oct 07, 2007
Last update date
Aug 14, 2011
Contact name
Cheol-Koo Lee
E-mail(s)
cklee2005@korea.ac.kr
Phone
82-2-3290-3008
Organization name
Korea University
Department
Biotechnology
Lab
Functional Genomics
Street address
Korea University, Biotechnology #318 West building, Anam-dong, Seongbuk-gu
City
Seoul
ZIP/Postal code
136-701
Country
South Korea
Platform ID
GPL2112
Series (1)
GSE9256
Transcriptomes from Longissimus dorsi samples of Korean Native Cattle (Hanwoo)
Data table header descriptions
ID_REF
VALUE
Value
ABS_CALL
Absolute call
DETECTION P-VALUE
Detection p value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1709.13
P
0.000224668
AFFX-BioB-M_at
2091.16
P
4.42873e-05
AFFX-BioB-3_at
1749.48
P
7.00668e-05
AFFX-BioC-5_at
5761.35
P
5.16732e-05
AFFX-BioC-3_at
5166.68
P
4.42873e-05
AFFX-BioDn-5_at
10340.5
P
4.42873e-05
AFFX-BioDn-3_at
17732.1
P
6.02111e-05
AFFX-CreX-5_at
48766.5
P
5.16732e-05
AFFX-CreX-3_at
56383.8
P
4.42873e-05
AFFX-DapX-5_at
1091.94
P
4.42873e-05
AFFX-DapX-M_at
2493.01
P
0.000340305
AFFX-DapX-3_at
4429.19
P
6.02111e-05
AFFX-LysX-5_at
159.671
P
0.00110197
AFFX-LysX-M_at
253.99
P
0.0125468
AFFX-LysX-3_at
498.658
P
0.000126798
AFFX-PheX-5_at
194.19
P
0.00010954
AFFX-PheX-M_at
244.212
P
0.00359458
AFFX-PheX-3_at
633.68
P
0.000445901
AFFX-ThrX-5_at
505.872
P
0.000340305
AFFX-ThrX-M_at
556.207
P
5.16732e-05
Total number of rows:
24128
Table truncated, full table size
861 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM234933.CEL.gz
3.1 Mb
(ftp)
(http)
CEL
GSM234933.CHP.gz
5.6 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|