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GEO accession:
Sample GSM234934
Query DataSets for GSM234934
Status
Public on Oct 06, 2008
Title
KNC_02
Sample type
RNA
Source name
skeletal muscle
Organism
Bos taurus
Characteristics
~2 years old Hanwoo (Korean native cattle) longissimus dorsi
Extracted molecule
polyA RNA
Extraction protocol
total RNA: Trizol reagent
poly A RNA: Qiagen oligotex resin
Label
biotin
Label protocol
Affymetrix protocol
Hybridization protocol
Affymetrix protocol
Scan protocol
Affymetrix protocol
Description
GeneChip Bovine Genome Array
Data processing
global scaling
Submission date
Oct 07, 2007
Last update date
Aug 14, 2011
Contact name
Cheol-Koo Lee
E-mail(s)
cklee2005@korea.ac.kr
Phone
82-2-3290-3008
Organization name
Korea University
Department
Biotechnology
Lab
Functional Genomics
Street address
Korea University, Biotechnology #318 West building, Anam-dong, Seongbuk-gu
City
Seoul
ZIP/Postal code
136-701
Country
South Korea
Platform ID
GPL2112
Series (1)
GSE9256
Transcriptomes from Longissimus dorsi samples of Korean Native Cattle (Hanwoo)
Data table header descriptions
ID_REF
VALUE
Value
ABS_CALL
Absolute call
DETECTION P-VALUE
Detection p value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
479.554
P
0.000581214
AFFX-BioB-M_at
458.271
P
0.00010954
AFFX-BioB-3_at
336.681
P
0.000972149
AFFX-BioC-5_at
1530.31
P
5.16732e-05
AFFX-BioC-3_at
1318.76
P
4.42873e-05
AFFX-BioDn-5_at
2516.16
P
4.42873e-05
AFFX-BioDn-3_at
4402.15
P
9.4506e-05
AFFX-CreX-5_at
13370.2
P
5.16732e-05
AFFX-CreX-3_at
16128.7
P
4.42873e-05
AFFX-DapX-5_at
1355.83
P
5.16732e-05
AFFX-DapX-M_at
2780.57
P
9.4506e-05
AFFX-DapX-3_at
4442.58
P
4.42873e-05
AFFX-LysX-5_at
145.161
P
0.000146581
AFFX-LysX-M_at
300.787
P
0.000662269
AFFX-LysX-3_at
591.356
P
7.00668e-05
AFFX-PheX-5_at
175.288
P
9.4506e-05
AFFX-PheX-M_at
325.085
P
0.000509415
AFFX-PheX-3_at
508.605
P
0.000224668
AFFX-ThrX-5_at
505.129
P
6.02111e-05
AFFX-ThrX-M_at
638.319
P
4.42873e-05
Total number of rows:
24128
Table truncated, full table size
867 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM234934.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
GSM234934.CHP.gz
5.9 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
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