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GEO accession:
Sample GSM234935
Query DataSets for GSM234935
Status
Public on Oct 06, 2008
Title
KNC_03
Sample type
RNA
Source name
skeletal muscle
Organism
Bos taurus
Characteristics
~2 years old Hanwoo (Korean native cattle) longissimus dorsi
Extracted molecule
polyA RNA
Extraction protocol
total RNA: Trizol reagent
poly A RNA: Qiagen oligotex resin
Label
biotin
Label protocol
Affymetrix protocol
Hybridization protocol
Affymetrix protocol
Scan protocol
Affymetrix protocol
Description
GeneChip Bovine Genome Array
Data processing
global scaling
Submission date
Oct 07, 2007
Last update date
Aug 14, 2011
Contact name
Cheol-Koo Lee
E-mail(s)
cklee2005@korea.ac.kr
Phone
82-2-3290-3008
Organization name
Korea University
Department
Biotechnology
Lab
Functional Genomics
Street address
Korea University, Biotechnology #318 West building, Anam-dong, Seongbuk-gu
City
Seoul
ZIP/Postal code
136-701
Country
South Korea
Platform ID
GPL2112
Series (1)
GSE9256
Transcriptomes from Longissimus dorsi samples of Korean Native Cattle (Hanwoo)
Data table header descriptions
ID_REF
VALUE
Value
ABS_CALL
Absolute call
DETECTION P-VALUE
Detection p value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1081.57
P
6.02111e-05
AFFX-BioB-M_at
1180.43
P
4.42873e-05
AFFX-BioB-3_at
945.921
P
4.42873e-05
AFFX-BioC-5_at
3271.7
P
4.42873e-05
AFFX-BioC-3_at
2762.05
P
4.42873e-05
AFFX-BioDn-5_at
5695.08
P
4.42873e-05
AFFX-BioDn-3_at
10138.3
P
6.02111e-05
AFFX-CreX-5_at
27819.2
P
4.42873e-05
AFFX-CreX-3_at
32551.4
P
4.42873e-05
AFFX-DapX-5_at
2675.27
P
4.42873e-05
AFFX-DapX-M_at
4275.44
P
7.00668e-05
AFFX-DapX-3_at
6484.29
P
4.42873e-05
AFFX-LysX-5_at
240.785
P
5.16732e-05
AFFX-LysX-M_at
510.399
P
0.000258358
AFFX-LysX-3_at
951.089
P
7.00668e-05
AFFX-PheX-5_at
286.739
P
0.000224668
AFFX-PheX-M_at
462.69
P
0.000389797
AFFX-PheX-3_at
799.091
P
5.16732e-05
AFFX-ThrX-5_at
840.767
P
4.42873e-05
AFFX-ThrX-M_at
1012.92
P
4.42873e-05
Total number of rows:
24128
Table truncated, full table size
867 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM234935.CEL.gz
3.1 Mb
(ftp)
(http)
CEL
GSM234935.CHP.gz
5.7 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
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