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GEO accession:
Sample GSM234938
Query DataSets for GSM234938
Status
Public on Oct 06, 2008
Title
KNC_06
Sample type
RNA
Source name
skeletal muscle
Organism
Bos taurus
Characteristics
~2 years Hanwoo (Korean native cattle) longissimus dorci
Extracted molecule
polyA RNA
Extraction protocol
total RNA: Trizol reagent
poly A RNA: Qiagen oligotex resin
Label
biotin
Label protocol
Affymetrix protocol
Hybridization protocol
Affymetrix protocol
Scan protocol
Affymetrix protocol
Description
GeneChip Bovine Genome Array
Data processing
global scaling
Submission date
Oct 07, 2007
Last update date
Aug 14, 2011
Contact name
Cheol-Koo Lee
E-mail(s)
cklee2005@korea.ac.kr
Phone
82-2-3290-3008
Organization name
Korea University
Department
Biotechnology
Lab
Functional Genomics
Street address
Korea University, Biotechnology #318 West building, Anam-dong, Seongbuk-gu
City
Seoul
ZIP/Postal code
136-701
Country
South Korea
Platform ID
GPL2112
Series (1)
GSE9256
Transcriptomes from Longissimus dorsi samples of Korean Native Cattle (Hanwoo)
Data table header descriptions
ID_REF
VALUE
Value
ABS_CALL
Absolute call
DETECTION P-VALUE
Detection p value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1693.79
P
0.00012664
AFFX-BioB-M_at
1907.07
P
4.42873e-05
AFFX-BioB-3_at
1640.88
P
7.00668e-05
AFFX-BioC-5_at
4621.14
P
4.42873e-05
AFFX-BioC-3_at
4876.97
P
4.42873e-05
AFFX-BioDn-5_at
8626
P
4.42873e-05
AFFX-BioDn-3_at
14016.2
P
5.16732e-05
AFFX-CreX-5_at
46104
P
4.42873e-05
AFFX-CreX-3_at
51825.4
P
4.42873e-05
AFFX-DapX-5_at
1352.29
P
5.16732e-05
AFFX-DapX-M_at
3002.11
P
0.000195116
AFFX-DapX-3_at
5461.9
P
4.42873e-05
AFFX-LysX-5_at
141.185
P
0.00124642
AFFX-LysX-M_at
297.293
P
0.00844047
AFFX-LysX-3_at
631.309
P
5.16732e-05
AFFX-PheX-5_at
193.992
P
0.0012475
AFFX-PheX-M_at
306.927
P
0.00618711
AFFX-PheX-3_at
690.867
P
0.000445901
AFFX-ThrX-5_at
653.398
P
5.16732e-05
AFFX-ThrX-M_at
587.47
P
4.42873e-05
Total number of rows:
24128
Table truncated, full table size
860 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM234938.CEL.gz
3.1 Mb
(ftp)
(http)
CEL
GSM234938.CHP.gz
5.6 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
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