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GEO accession:
Sample GSM234940
Query DataSets for GSM234940
Status
Public on Oct 06, 2008
Title
KNC_08
Sample type
RNA
Source name
skeletal muscle
Organism
Bos taurus
Characteristics
~2 years Hanwoo (Korean native cattle) longissimus dorci
Extracted molecule
polyA RNA
Extraction protocol
total RNA: Trizol reagent
poly A RNA: Qiagen oligotex resin
Label
biotin
Label protocol
Affymetrix protocol
Hybridization protocol
Affymetrix protocol
Scan protocol
Affymetrix protocol
Description
GeneChip Bovine Genome Array
Data processing
global scaling
Submission date
Oct 07, 2007
Last update date
Aug 14, 2011
Contact name
Cheol-Koo Lee
E-mail(s)
cklee2005@korea.ac.kr
Phone
82-2-3290-3008
Organization name
Korea University
Department
Biotechnology
Lab
Functional Genomics
Street address
Korea University, Biotechnology #318 West building, Anam-dong, Seongbuk-gu
City
Seoul
ZIP/Postal code
136-701
Country
South Korea
Platform ID
GPL2112
Series (1)
GSE9256
Transcriptomes from Longissimus dorsi samples of Korean Native Cattle (Hanwoo)
Data table header descriptions
ID_REF
VALUE
Value
ABS_CALL
Absolute call
DETECTION P-VALUE
Detection p value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
800.509
P
0.000224668
AFFX-BioB-M_at
810.29
P
4.42873e-05
AFFX-BioB-3_at
570.117
P
0.000258358
AFFX-BioC-5_at
2319.16
P
4.42873e-05
AFFX-BioC-3_at
2226.26
P
4.42873e-05
AFFX-BioDn-5_at
4189.8
P
4.42873e-05
AFFX-BioDn-3_at
7643.44
P
8.14279e-05
AFFX-CreX-5_at
21109
P
5.16732e-05
AFFX-CreX-3_at
23042.7
P
4.42873e-05
AFFX-DapX-5_at
1568.61
P
5.16732e-05
AFFX-DapX-M_at
3450.09
P
6.02111e-05
AFFX-DapX-3_at
5196.42
P
4.42873e-05
AFFX-LysX-5_at
177.085
P
0.000340305
AFFX-LysX-M_at
413.214
P
0.0012475
AFFX-LysX-3_at
682.79
P
4.42873e-05
AFFX-PheX-5_at
203.025
P
0.000126798
AFFX-PheX-M_at
305.079
P
0.000662269
AFFX-PheX-3_at
575.382
P
0.000146581
AFFX-ThrX-5_at
564.06
P
4.42873e-05
AFFX-ThrX-M_at
675.422
P
4.42873e-05
Total number of rows:
24128
Table truncated, full table size
866 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM234940.CEL.gz
3.2 Mb
(ftp)
(http)
CEL
GSM234940.CHP.gz
5.8 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
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