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GEO accession:
Sample GSM234941
Query DataSets for GSM234941
Status
Public on Oct 06, 2008
Title
KNC_09
Sample type
RNA
Source name
skeletal muscle
Organism
Bos taurus
Characteristics
~2 years Hanwoo (Korean native cattle) longissimus dorci
Extracted molecule
polyA RNA
Extraction protocol
total RNA: Trizol reagent
poly A RNA: Qiagen oligotex resin
Label
biotin
Label protocol
Affymetrix protocol
Hybridization protocol
Affymetrix protocol
Scan protocol
Affymetrix protocol
Description
GeneChip Bovine Genome Array
Data processing
global scaling
Submission date
Oct 07, 2007
Last update date
Aug 14, 2011
Contact name
Cheol-Koo Lee
E-mail(s)
cklee2005@korea.ac.kr
Phone
82-2-3290-3008
Organization name
Korea University
Department
Biotechnology
Lab
Functional Genomics
Street address
Korea University, Biotechnology #318 West building, Anam-dong, Seongbuk-gu
City
Seoul
ZIP/Postal code
136-701
Country
South Korea
Platform ID
GPL2112
Series (1)
GSE9256
Transcriptomes from Longissimus dorsi samples of Korean Native Cattle (Hanwoo)
Data table header descriptions
ID_REF
VALUE
Value
ABS_CALL
Absolute call
DETECTION P-VALUE
Detection p value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
672.12
P
0.000662269
AFFX-BioB-M_at
911.205
P
0.000662269
AFFX-BioB-3_at
636.402
P
0.000258358
AFFX-BioC-5_at
2318.77
P
6.02111e-05
AFFX-BioC-3_at
2184.56
P
4.42873e-05
AFFX-BioDn-5_at
4394.94
P
4.42873e-05
AFFX-BioDn-3_at
8168.17
P
0.000126798
AFFX-CreX-5_at
20379.5
P
5.16732e-05
AFFX-CreX-3_at
25254.9
P
4.42873e-05
AFFX-DapX-5_at
1085
P
4.42873e-05
AFFX-DapX-M_at
2270.3
P
0.000296708
AFFX-DapX-3_at
3403.06
P
5.16732e-05
AFFX-LysX-5_at
75.9074
P
0.000296708
AFFX-LysX-M_at
304.76
P
0.00227496
AFFX-LysX-3_at
432.166
P
7.00668e-05
AFFX-PheX-5_at
176.358
P
0.000126798
AFFX-PheX-M_at
238.391
P
0.00255552
AFFX-PheX-3_at
422.172
P
0.000296708
AFFX-ThrX-5_at
391.614
P
9.4506e-05
AFFX-ThrX-M_at
433.843
P
5.16732e-05
Total number of rows:
24128
Table truncated, full table size
865 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM234941.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
GSM234941.CHP.gz
5.9 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
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