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Sample GSM235399 Query DataSets for GSM235399
Status Public on Dec 15, 2009
Title spleen_WT_rep1
Sample type RNA
 
Source name spleen cells from C57Bl/6J wild-type male
Organism Mus musculus
Characteristics Strain: C57Bl/6J
Sex: male
Tissue: whole spleen tissue
Biomaterial provider Jackson Labs
Extracted molecule total RNA
Extraction protocol Combination of Trizol protocol followed by Qiagen RNeasy column
Label biotin
Label protocol Affymetrix One cycle target labeling kit
 
Hybridization protocol Standard Affymetrix hybridization plus EukGE-WS2v5 fluidics protocol
Scan protocol Affymetrix 7G scanner
Description This study was designed to identify gene expression between spleen cells of male mice with and without the Yaa mutation.
Data processing Affymetrix MAS5.0 normalization & transforming algorithm
 
Submission date Oct 09, 2007
Last update date Aug 14, 2011
Contact name Bart Frank
E-mail(s) frank@omrf.org
Organization name OMRF
Street address 825 NE 13 St
City Oklahoma City
State/province OK
ZIP/Postal code 73103
Country USA
 
Platform ID GPL1261
Series (1)
GSE9287 Differential gene expression in wild-type versus Yaa mutant mouse spleen cells

Data table header descriptions
ID_REF
VALUE Affymetrix MAS5.0 signal intensities
ABS_CALL Affymetrix Present/Absent call
DETECTION P-VALUE Affymetrix p-value for detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 182.285 P 0.000389797
AFFX-BioB-M_at 386.111 P 4.42873e-05
AFFX-BioB-3_at 312.545 P 0.00010954
AFFX-BioC-5_at 636.452 P 4.42873e-05
AFFX-BioC-3_at 680.163 P 4.42873e-05
AFFX-BioDn-5_at 1105.65 P 4.42873e-05
AFFX-BioDn-3_at 2774.74 P 4.42873e-05
AFFX-CreX-5_at 9580.9 P 4.42873e-05
AFFX-CreX-3_at 8825.07 P 4.42873e-05
AFFX-DapX-5_at 425.995 P 6.02111e-05
AFFX-DapX-M_at 817.403 P 9.4506e-05
AFFX-DapX-3_at 1101.68 P 5.16732e-05
AFFX-LysX-5_at 54.1161 P 9.4506e-05
AFFX-LysX-M_at 92.5299 P 0.00227496
AFFX-LysX-3_at 181.248 P 5.16732e-05
AFFX-PheX-5_at 85.2539 P 0.000126798
AFFX-PheX-M_at 90.3029 P 4.42873e-05
AFFX-PheX-3_at 139.337 P 0.000146581
AFFX-ThrX-5_at 106.445 P 0.000224668
AFFX-ThrX-M_at 153.943 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1381 Kbytes.




Supplementary file Size Download File type/resource
GSM235399.CEL.gz 3.7 Mb (ftp)(http) CEL
GSM235399.CHP.gz 246.9 Kb (ftp)(http) CHP
Processed data included within Sample table

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