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Sample GSM236566 Query DataSets for GSM236566
Status Public on Dec 15, 2009
Title spleen_WT_rep2
Sample type RNA
 
Source name spleen cells from C57Bl/6J wild-type male
Organism Mus musculus
Characteristics Strain: C57Bl/6J
Sex: male
Tissue: whole spleen tissue
Biomaterial provider Jackson Labs
Extracted molecule total RNA
Extraction protocol Combination of Trizol protocol followed by Qiagen RNeasy column
Label biotin
Label protocol Affymetrix One cycle target labeling kit
 
Hybridization protocol Standard Affymetrix hybridization plus EukGE-WS2v5 fluidics protocol
Scan protocol Affymetrix 7G scanner
Description This study was designed to identify gene expression between spleen cells of male mice with and without the Yaa mutation.
Data processing Affymetrix MAS5.0 normalization & transforming algorithm
 
Submission date Oct 10, 2007
Last update date Aug 14, 2011
Contact name Bart Frank
E-mail(s) frank@omrf.org
Organization name OMRF
Street address 825 NE 13 St
City Oklahoma City
State/province OK
ZIP/Postal code 73103
Country USA
 
Platform ID GPL1261
Series (1)
GSE9287 Differential gene expression in wild-type versus Yaa mutant mouse spleen cells

Data table header descriptions
ID_REF
VALUE Affymetrix MAS5.0 signal intensities
ABS_CALL Affymetrix present/absent call
DETECTION P-VALUE Affymetrix p-value for detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 211.747 P 0.000258358
AFFX-BioB-M_at 348.146 P 4.42873e-05
AFFX-BioB-3_at 301.483 P 9.4506e-05
AFFX-BioC-5_at 671.953 P 4.42873e-05
AFFX-BioC-3_at 734.502 P 5.16732e-05
AFFX-BioDn-5_at 1339.05 P 4.42873e-05
AFFX-BioDn-3_at 2866.23 P 4.42873e-05
AFFX-CreX-5_at 9672.18 P 5.16732e-05
AFFX-CreX-3_at 10300.1 P 4.42873e-05
AFFX-DapX-5_at 529.084 P 6.02111e-05
AFFX-DapX-M_at 959.204 P 0.00010954
AFFX-DapX-3_at 1181.95 P 5.16732e-05
AFFX-LysX-5_at 56.763 P 0.000169227
AFFX-LysX-M_at 91.0703 P 0.00110197
AFFX-LysX-3_at 206.997 P 0.00010954
AFFX-PheX-5_at 97.7662 P 4.42873e-05
AFFX-PheX-M_at 109.849 P 6.02111e-05
AFFX-PheX-3_at 127.361 P 0.000169227
AFFX-ThrX-5_at 127.513 P 0.000195116
AFFX-ThrX-M_at 176.985 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1383 Kbytes.




Supplementary file Size Download File type/resource
GSM236566.CEL.gz 3.8 Mb (ftp)(http) CEL
GSM236566.CHP.gz 245.5 Kb (ftp)(http) CHP
Processed data included within Sample table

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