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Sample GSM236567 Query DataSets for GSM236567
Status Public on Dec 15, 2009
Title spleen_WT_rep3
Sample type RNA
 
Source name spleen cells from C57Bl/6J wild-type male
Organism Mus musculus
Characteristics Strain: C57Bl/6J
Sex: male
Tissue: whole spleen tissue
Biomaterial provider Jackson Labs
Extracted molecule total RNA
Extraction protocol Combination of Trizol protocol followed by Qiagen RNeasy column
Label biotin
Label protocol Affymetrix One cycle target labeling kit
 
Hybridization protocol Standard Affymetrix hybridization plus EukGE-WS2v5 fluidics protocol
Scan protocol Affymetrix 7G scanner
Description This study was designed to identify gene expression between spleen cells of male mice with and without the Yaa mutation.
Data processing Affymetrix MAS5.0 normalization & transforming algorithm
 
Submission date Oct 10, 2007
Last update date Aug 14, 2011
Contact name Bart Frank
E-mail(s) frank@omrf.org
Organization name OMRF
Street address 825 NE 13 St
City Oklahoma City
State/province OK
ZIP/Postal code 73103
Country USA
 
Platform ID GPL1261
Series (1)
GSE9287 Differential gene expression in wild-type versus Yaa mutant mouse spleen cells

Data table header descriptions
ID_REF
VALUE Affymetrix MAS5.0 signal intensities
ABS_CALL Affymetrix present/absent call
DETECTION P-VALUE Affymetrix p-value for detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 193.968 P 0.000195116
AFFX-BioB-M_at 375.652 P 4.42873e-05
AFFX-BioB-3_at 274.632 P 5.16732e-05
AFFX-BioC-5_at 678.834 P 4.42873e-05
AFFX-BioC-3_at 680.655 P 4.42873e-05
AFFX-BioDn-5_at 1231.05 P 4.42873e-05
AFFX-BioDn-3_at 2665.26 P 4.42873e-05
AFFX-CreX-5_at 8716.91 P 5.16732e-05
AFFX-CreX-3_at 9963.66 P 4.42873e-05
AFFX-DapX-5_at 459.411 P 4.42873e-05
AFFX-DapX-M_at 721.801 P 0.00010954
AFFX-DapX-3_at 1001.8 P 5.16732e-05
AFFX-LysX-5_at 35.2649 P 0.000169227
AFFX-LysX-M_at 65.943 P 0.00227496
AFFX-LysX-3_at 137.469 P 8.14279e-05
AFFX-PheX-5_at 75.8817 P 5.16732e-05
AFFX-PheX-M_at 87.4815 P 7.00668e-05
AFFX-PheX-3_at 108.914 P 0.000126798
AFFX-ThrX-5_at 94.6851 P 0.000662269
AFFX-ThrX-M_at 115.666 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1381 Kbytes.




Supplementary file Size Download File type/resource
GSM236567.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM236567.CHP.gz 246.7 Kb (ftp)(http) CHP
Processed data included within Sample table

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