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Sample GSM237616 Query DataSets for GSM237616
Status Public on Dec 15, 2007
Title striatum_wildtype_2
Sample type RNA
 
Source name Wild type mouse striatum, postnatal day 0
Organism Mus musculus
Characteristics Strain: BALB/c
Age: postnatal day 0
Genotype: Wild type
Extracted molecule total RNA
Extraction protocol RNA was extracted using the StrataPrep Total RNA Mini Kit (Stratagene, La Jolla, CA), and RNA quality was assayed using a bioanalyzer (Agilent Technologies, Paola Alto, CA)
Label biotin
Label protocol Affymetrix small smple protocol
 
Hybridization protocol Per Affymetrix instructions for Mouse 430 2.0 arrays
Scan protocol Per Affymetrix instructions for Mouse 430 2.0 arrays
Description medium spiny neuron, striatum, brain, mutant mouse, Ctip2, Bcl11b, affymetrix
Data processing Microarray data were normalized using the RMA function within Bioconductor (Irizarry et al., 2003).
 
Submission date Oct 15, 2007
Last update date Aug 28, 2018
Contact name Bradley Molyneaux
E-mail(s) bmolyneaux@partners.org
Phone 617-726-3552
Organization name Harvard Medical School
Department MGH-HMS Center For Nervous System Repair
Lab Macklis Lab
Street address
City Boston
State/province MA
ZIP/Postal code 02114
Country USA
 
Platform ID GPL1261
Series (1)
GSE9330 Expression data from wild type and Ctip2-/- (Bcl11b) mutant mouse striatum at P0
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE RMA normalized intensity

Data table
ID_REF VALUE
1415670_at 8.256679724
1415671_at 10.09932322
1415672_at 10.41731706
1415673_at 8.436805359
1415674_a_at 10.59875964
1415675_at 9.089905186
1415676_a_at 11.44720792
1415677_at 7.885896539
1415678_at 10.40890082
1415679_at 10.09872368
1415680_at 7.947630943
1415681_at 9.562739267
1415682_at 6.524438259
1415683_at 10.0714717
1415684_at 6.68273324
1415685_at 6.185389525
1415686_at 9.13791671
1415687_a_at 9.440507839
1415688_at 9.9407973
1415689_s_at 7.040101701

Total number of rows: 45037

Table truncated, full table size 1024 Kbytes.




Supplementary file Size Download File type/resource
GSM237616.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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