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Sample GSM237758 Query DataSets for GSM237758
Status Public on Jan 19, 2008
Title F1 hybrid (musculus mother x castaneus father) 2, biological rep2, brain
Sample type RNA
Source name brain
Organism Mus musculus musculus x M. m. castaneus
Characteristics Gender: male, age: 53 days, tissue: brain
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA was prepared according to the Ambion MessageAmp™ II aRNA Amplification Kit from 1ug total RNA.
Hybridization protocol Following fragmentation, 12ug of cRNA were hybridized for 16-18 hr at 45 °C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GCS 3000 scanner.
Description Gene expression data from M. m. musculus mother x M. m. castaneus father F1 hybrids, brain
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Bioconductor default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 660 for brain and testis and to 800 for liver.
Submission date Oct 16, 2007
Last update date Aug 28, 2018
Contact name Ruth Rottscheidt
Organization name University of Cologne
Department Institute for Genetics
Lab Tautz Harr Mouse Evolutionary Genomics
Street address Zuelpicher Strasse 47
City Cologne
ZIP/Postal code 50674
Country Germany
Platform ID GPL1261
Series (1)
GSE9338 Expression data from Mus musculus subspecies and their F1 hybrids for 3 tissues (brain, liver, testis)
Reanalyzed by GSE119085

Data table header descriptions
VALUE MAS5.0 signal intensity

Data table
1415670_at 1156
1415671_at 7012
1415672_at 5073
1415673_at 731
1415674_a_at 1702
1415675_at 1478
1415676_a_at 4336
1415677_at 799
1415678_at 2865
1415679_at 4763
1415680_at 332
1415681_at 1693
1415682_at 700
1415683_at 2561
1415684_at 538
1415685_at 1042
1415686_at 2831
1415687_a_at 11325
1415688_at 2634
1415689_s_at 1026

Total number of rows: 45037

Table truncated, full table size 663 Kbytes.

Supplementary file Size Download File type/resource
GSM237758.CEL.gz 4.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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