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Sample GSM237783 Query DataSets for GSM237783
Status Public on Jan 19, 2008
Title castaneus male 1, biological rep1, testis
Sample type RNA
 
Source name testis
Organism Mus musculus castaneus
Characteristics Gender: male, age: 47 days, tissue: testis
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA was prepared according to the Ambion MessageAmp™ II aRNA Amplification Kit from 1ug total RNA.
 
Hybridization protocol Following fragmentation, 12ug of cRNA were hybridized for 16-18 hr at 45 °C on GeneChip Mouse Genome 430 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix GCS 3000 scanner.
Description Gene expression data from M. m. castaneus testis
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Bioconductor default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 660 for brain and testis and to 800 for liver.
 
Submission date Oct 16, 2007
Last update date Aug 28, 2018
Contact name Ruth Rottscheidt
E-mail(s) ruth.rottscheidt@uni-koeln.de
Organization name University of Cologne
Department Institute for Genetics
Lab Tautz Harr Mouse Evolutionary Genomics
Street address Zuelpicher Strasse 47
City Cologne
ZIP/Postal code 50674
Country Germany
 
Platform ID GPL1261
Series (1)
GSE9338 Expression data from Mus musculus subspecies and their F1 hybrids for 3 tissues (brain, liver, testis)
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity

Data table
ID_REF VALUE
1415670_at 986
1415671_at 1826
1415672_at 3572
1415673_at 728
1415674_a_at 1374
1415675_at 821
1415676_a_at 3073
1415677_at 2477
1415678_at 3562
1415679_at 4831
1415680_at 701
1415681_at 2475
1415682_at 538
1415683_at 3460
1415684_at 211
1415685_at 1682
1415686_at 901
1415687_a_at 3751
1415688_at 1143
1415689_s_at 563

Total number of rows: 45037

Table truncated, full table size 662 Kbytes.




Supplementary file Size Download File type/resource
GSM237783.CEL.gz 6.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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