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Sample GSM239312 Query DataSets for GSM239312
Status Public on Dec 30, 2007
Title HT29 resistant cells replicate 1
Sample type RNA
Source name HT29 cells resistant to 10e-5M methotrexate
Organism Homo sapiens
Characteristics colon cancer cell line resistant to 10e-5M methotrexate
Extracted molecule total RNA
Extraction protocol RNeasy Mini kit from Qiagen
Label biotin
Label protocol Affymetrix protocol for HG U133 A 2.0
Hybridization protocol Affymetrix protocol for HG U133 A 2.0
Scan protocol Affymetrix protocol for HG U133 A 2.0
Description gene expression profile of HT29 cells resistant to 10e-5M Methotrexate
Data processing Value generated using MAS 5.0 non-scaled.
Submission date Oct 23, 2007
Last update date Aug 14, 2011
Contact name Carlos J Ciudad
Phone +34-93-403-4455
Organization name University of Barcelona
Department Biochemistry and Molecular Biology
Lab School of Pharmacy
Street address Av. Juan XXIII-27
City Barcelona
State/province Barcelona
ZIP/Postal code 08028
Country Spain
Platform ID GPL571
Series (1)
GSE9412 Transcriptional regulation of aldo-keto reductase 1C1 in human colon cancer cells resistant to methotrexate

Data table header descriptions
VALUE signal
ABS_CALL present or absent
Detection p-value detection p-value

Data table
ID_REF VALUE ABS_CALL Detection p-value
AFFX-BioB-5_at 150.5 P 0.00039
AFFX-BioB-M_at 315.7 P 0.000044
AFFX-BioB-3_at 123.3 P 0.000147
AFFX-BioC-5_at 336.5 P 0.00007
AFFX-BioC-3_at 374.5 P 0.000044
AFFX-BioDn-5_at 400.8 P 0.000044
AFFX-BioDn-3_at 2068.9 P 0.00007
AFFX-CreX-5_at 4161.6 P 0.000044
AFFX-CreX-3_at 6098.2 P 0.000044
AFFX-DapX-5_at 3.1 A 0.275146
AFFX-DapX-M_at 3.1 A 0.617411
AFFX-DapX-3_at 5.6 A 0.411373
AFFX-LysX-5_at 0.5 A 0.749223
AFFX-LysX-M_at 1.1 A 0.83416
AFFX-LysX-3_at 4 A 0.131361
AFFX-PheX-5_at 3.3 A 0.327079
AFFX-PheX-M_at 0.2 A 0.998409
AFFX-PheX-3_at 8.3 A 0.300606
AFFX-ThrX-5_at 5 A 0.340648
AFFX-ThrX-M_at 0.9 A 0.724871

Total number of rows: 22277

Table truncated, full table size 573 Kbytes.

Supplementary file Size Download File type/resource
GSM239312.CEL.gz 3.0 Mb (ftp)(http) CEL
Processed data included within Sample table
Raw data provided as supplementary file

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