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GEO accession:
Sample GSM239662
Query DataSets for GSM239662
Status
Public on Feb 15, 2009
Title
Cortical vs Spinal Cord NS
Sample type
RNA
Channel 1
Source name
Spinal Cord NS
Organism
Mus musculus
Characteristics
E14 Secondary NS from cd1 mouse
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
cy3
Label protocol
Agilent Low input amplification
Channel 2
Source name
Cortical NS
Organism
Mus musculus
Characteristics
E14 Secondary NS from cd1 mouse
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Cy5
Label protocol
Agilent Low input amplification
Hybridization protocol
as per agilent protocol
Scan protocol
as per agilent protocol
Description
as per agilent protocol
Data processing
feature extraction from agilent
Submission date
Oct 25, 2007
Last update date
Aug 14, 2011
Contact name
Terry Kelly
Organization name
UCLA
Lab
Kornblum
Street address
700 Westwood Blvd
City
Los Angeles
State/province
CA
ZIP/Postal code
90095
Country
USA
Platform ID
GPL2872
Series (1)
GSE9433
Secondary NS from Cortex and spinal cord
Data table header descriptions
ID_REF
VALUE
Log ratio Cy5/Cy3
Ch1_SIG_MEAN
Spinal Cord NS
Ch2_SIG_MEAN
Cortical NS
Ch1_BKG_MEAN
Spinal Cord Background
Ch2_BKG_MEAN
Cortical Background
Data table
ID_REF
VALUE
Ch1_SIG_MEAN
Ch2_SIG_MEAN
Ch1_BKG_MEAN
Ch2_BKG_MEAN
2
-2.38E-02
1.44E+02
1.84E+02
2.47E+01
4.46E+01
3
-2.18E-01
7.88E+01
5.48E+01
2.47E+01
4.50E+01
4
-4.47E-02
3.49E+02
5.23E+02
2.50E+01
4.46E+01
5
-5.20E-01
9.64E+01
6.49E+01
2.49E+01
4.49E+01
7
-9.05E-02
1.10E+02
1.11E+02
2.49E+01
4.53E+01
8
-1.97E-01
9.50E+01
7.93E+01
2.51E+01
4.52E+01
9
6.62E-02
5.36E+02
1.07E+03
2.48E+01
4.43E+01
11
-5.39E-01
1.02E+02
6.67E+01
2.47E+01
4.45E+01
12
-5.95E-01
9.10E+01
5.79E+01
2.51E+01
4.42E+01
13
-5.03E-01
9.47E+01
6.35E+01
2.50E+01
4.38E+01
14
2.31E-01
5.26E+03
1.88E+04
2.48E+01
4.46E+01
15
-7.54E-03
2.98E+02
4.68E+02
2.49E+01
4.46E+01
16
-2.00E-01
1.16E+02
1.01E+02
2.48E+01
4.40E+01
17
-4.87E-01
1.11E+02
7.35E+01
2.49E+01
4.49E+01
18
1.42E-01
1.12E+03
2.85E+03
2.51E+01
4.55E+01
19
-6.63E-03
3.87E+02
6.28E+02
2.50E+01
4.50E+01
20
-3.43E-01
9.57E+01
6.85E+01
2.50E+01
4.41E+01
21
-4.07E-01
1.06E+02
7.31E+01
2.50E+01
4.43E+01
22
-2.07E-01
1.08E+02
8.92E+01
2.52E+01
4.44E+01
23
-5.75E-01
1.25E+02
7.58E+01
2.51E+01
4.47E+01
Total number of rows:
41174
Table truncated, full table size
2057 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM239662.txt.gz
11.2 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
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