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Sample GSM244741 Query DataSets for GSM244741
Status Public on Nov 27, 2007
Title Rat Hair cells from crista ampullaris_rep1
Sample type RNA
 
Source name Rat crista ampullaris
Organism Rattus norvegicus
Characteristics Brown norwary rats, 6-8 weeks old, crista ampullaris
Extracted molecule total RNA
Extraction protocol RNA was extracted using the Arcturus Picopur RNA Isolation Kit (Arcturus Bioscience, Mountain View, CA)
Label Cy5
Label protocol Biotin-labeled cRNA was prepared by linear amplification of the Poly(A)+ RNA population within the total RNA sample
 
Hybridization protocol Arrays were hybridized at 37oC for 20h in a shaking incubator.
Scan protocol Dried arrays were scanned with a GenePixTM 4000B scanner (Molecular Devices, Axon Instruments, Union City, CA).
Description Rat crista ampullaris, laser captured based on morphology
Data processing Raw values represent the final number of the spot after the background is subtracted out. Normalized values represent median global normalization method, i.e. raw intensity/median intensity of all spots on the array
 
Submission date Nov 26, 2007
Last update date Aug 14, 2011
Contact name Ashley Wackym
Organization name Medical College of Wisconsin
Department Otolaryngology
Lab Otolaryngology Research
Street address 9200 W. Wisconsin Ave
City Milwaukee
State/province WI
ZIP/Postal code 53226
Country USA
 
Platform ID GPL2896
Series (1)
GSE9684 Trophic Factor Gene Expression in Supporting Cells of the Crista Ampullaris:Implications for Hair Cell Regeneration

Data table header descriptions
ID_REF
VALUE Normalized signal - raw number/median of all spots on the array with bad quality -9999 values removed
Raw_intensity Final number of spot after background is taken out
UNF_VALUE Normalized signal - raw number/median of all spots on the array

Data table
ID_REF VALUE Raw_intensity UNF_VALUE
1001 260.9823 6903.4038 260.9823
1002 -9999 -9999
1004 3.7193 98.3818 3.7193
1005 57.3427 1516.8062 57.3427
1006 6.0434 159.8571 6.0434
1007 199.6014 5279.7788 199.6014
1008 219.0957 5795.4346 219.0957
1009 6.2477 165.2623 6.2477
1010 5.1009 134.9268 5.1009
1011 5.6289 148.8947 5.6289
1012 6.5758 173.9412 6.5758
1013 16.2198 429.0392 16.2198
1014 243.413 6438.6665 243.413
1015 250.9147 6637.1001 250.9147
1016 7.4256 196.4186 7.4256
1017 9.3651 247.7216 9.3651
1018 10.0346 265.4308 10.0346
1019 13.6742 361.7059 13.6742
1020 90.851 2403.1558 90.851
1021 226.408 5988.8569 226.408

Total number of rows: 35125

Table truncated, full table size 980 Kbytes.




Supplementary file Size Download File type/resource
GSM244741.TXT.gz 1.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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