GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM24480

Query DataSets for GSM24480

Status

Public on Jun 05, 2004

Title

RAW264.7 2 hour LPS

Sample type

RNA

Source name

RAW264.7

Organism

Mus musculus

Extracted molecule

total RNA

Description

Total RNA was extracted from RAW264.7 cells using an Ambion RNaqueous RNA extraction kit. Targets were produced using modified Affymetrix procedure from 5ug of total RNA.
Keywords = RAW264.7 macrophage

Submission date

Jun 02, 2004

Last update date

May 27, 2005

Contact name

Rachael Zoe Murray

E-mail(s)

r.murray@imb.uq.edu.au

Phone

+ 6173346335

Organization name

IMB

Lab

Stow Lab

Street address

City

Brisbane

ZIP/Postal code

QLD 4072

Country

Australia

Platform ID

GPL339

Series (1)

GSE1459

LPS effects on macrophages

Data table header descriptions
ID_REF
VALUE	'signal' a measure of the abundance of a transcript
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	59.0	P	0.006187
AFFX-BioB-M_at	80.4	P	0.000581
AFFX-BioB-3_at	54.7	P	0.012547
AFFX-BioC-5_at	196.7	P	0.000390
AFFX-BioC-3_at	139.3	P	0.000195
AFFX-BioDn-5_at	231.1	P	0.000060
AFFX-BioDn-3_at	901.7	P	0.000110
AFFX-CreX-5_at	2035.0	P	0.000044
AFFX-CreX-3_at	3892.7	P	0.000044
AFFX-DapX-5_at	8.8	A	0.102165
AFFX-DapX-M_at	10.1	A	0.089478
AFFX-DapX-3_at	2.2	A	0.876428
AFFX-LysX-5_at	7.0	A	0.275146
AFFX-LysX-M_at	3.2	A	0.645547
AFFX-LysX-3_at	4.9	A	0.425962
AFFX-PheX-5_at	1.3	A	0.957038
AFFX-PheX-M_at	6.8	A	0.617401
AFFX-PheX-3_at	9.3	A	0.500000
AFFX-ThrX-5_at	2.5	A	0.834139
AFFX-ThrX-M_at	11.8	A	0.185131

Total number of rows: 22690

Table truncated, full table size 616 Kbytes.

Supplementary data files not provided