genomic DNA was extracted and purified from MCF-7 using ZR Dyet DNA/RNA kit (Zymo research) according to standard instructions
Label
Cy3, Cy5
Label protocol
Standard Illumina Protocol
Hybridization protocol
bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human MethylationEPIC 850K Beadchip using standard Illumina protocol
Scan protocol
Standard Illumina procedures using Illumina iScan scanner
Description
SAMPLE 1 breast cancer mammary gland, breast; derived from metastatic site: pleural effusion
Data processing
Background correction, Extraction of CpGs with detection p-value ≥ 0.05 more than 25% of all samples, and BMIQ normalization
