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Sample GSM2493815 Query DataSets for GSM2493815
Status Public on Feb 14, 2018
Title dkfz_BT183_pGF1
Sample type genomic
 
Source name ETMR cell line'
Organism Homo sapiens
Characteristics sample type: ETMR cell line BT183 labeld by pGF1
Extracted molecule genomic DNA
Extraction protocol Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Blood & Cell Culture DNA Midi Kit (Qiagen, Hilden, Germany) after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany).
Label biotin/DNP
Label protocol Illumina
 
Hybridization protocol Illumina
Scan protocol Illumina iScan System
Data processing Raw signal intensities were obtained from IDAT-files using the minfi Bioconductor package. Signal intensities were normalized per sample by performing a background correction (shifting of mean negative control probe intensity to 0) and a dye-bias correction (scaling of mean normalization control probe intensity to 10,000). Standard beta-values were calculated.
 
Submission date Feb 16, 2017
Last update date Feb 14, 2018
Contact name Marcel Kool
E-mail(s) m.kool@dkfz.de
Organization name German Cancer Research Center DKFZ
Department Pediatric Neurooncology
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL21145
Series (1)
GSE94987 Methylation profiling of preclinical ETMR models

Data table header descriptions
ID_REF
VALUE Average Beta

Data table
ID_REF VALUE
cg18478105 0.0336846436366425
cg09835024 0.0420296708017871
cg14361672 0.899610757046376
cg01763666 0.897027250671835
cg12950382 0.901367761756129
cg02115394 0.113647938985718
cg25813447 0.0340303965420243
cg07779434 0.0581887322319767
cg13417420 0.00331965970106488
cg12480843 0.0192059816374547
cg26724186 0.906280136938056
cg24133276 0.0511131096405272
cg00617867 0.957915650712884
cg13773083 0.412833298871275
cg17236668 0.96704448719991
cg19607165 0.144379805740719
cg11073926 0.0983353089216598
cg08770523 0.47692412892337
cg08795713 0.930069486004851
cg24040570 0.0158270183931403

Total number of rows: 866895

Table truncated, full table size 24611 Kbytes.




Supplementary file Size Download File type/resource
GSM2493815_200784530105_R07C01_Grn.idat.gz 7.1 Mb (ftp)(http) IDAT
GSM2493815_200784530105_R07C01_Red.idat.gz 7.2 Mb (ftp)(http) IDAT
Processed data included within Sample table

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