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Sample GSM250925 Query DataSets for GSM250925
Status Public on Dec 16, 2008
Title wt-Aorta-78-weeks-3
Sample type RNA
Source name total aorta
Organism Mus musculus
Characteristics strain: C57BL/6J
gender: male
age: 78 weeks
tissue: aorta
Treatment protocol excised, rinsed with cold PBS (2mM EDTA), removed adipose and connective tissue
Growth protocol Maintained under normal mouse chow / SPF conditions (12h light-dark cycle)
Extracted molecule total RNA
Extraction protocol Qiagen RNEasy Lipid Tissue Mini Kit, Standardprotocol
Label Biotin/SAPE with Anti Streptavidin signal amplification
Label protocol ENZO T7 High Yield Transcript Labelling Kit, 24h IVT
Hybridization protocol 60rpm, 18h, 45 centigrade in Affymetrix Hybridization Buffer
Scan protocol Affymetrix Scanner 3000, single scan
Description Staining with Fluidic Station 400 Protocol: EukGe-WS2v4
Data processing GCOS 1.4, scaled to 500
Submission date Dec 17, 2007
Last update date Aug 28, 2018
Contact name Andreas Johann Richard Habenicht
Organization name Ludwig Maximilians Universität München
Department Medicine
Lab Institute for Cardiovascular Disease Prevention
Street address Pettenkoferstraße 9a
City Munich
State/province Bavaria
ZIP/Postal code 80336
Country Germany
Platform ID GPL1261
Series (2)
GSE10000 Age-dependent aorta transcriptomes in wild-type and apoE-deficient C57BL/6J mice
GSE40156 Transcript atlases reveal that artery tertiary lymphoid organs but not secondary lymphoid organs control key steps of atherosclerosis T cell immunity in aged apoe-/- mice.
Reanalyzed by GSE119085

Data table header descriptions
VALUE Signal value scaled to 500 by GCOS
ABS_CALL Call by default alpha
DETECTION P-VALUE Detection p-value as calculated by GCOS

Data table
AFFX-BioB-5_at 379.2 P 0.009337
AFFX-BioB-M_at 599.2 P 0.000258
AFFX-BioB-3_at 260.4 P 0.002023
AFFX-BioC-5_at 1275.2 P 0.000095
AFFX-BioC-3_at 1393.4 P 0.000044
AFFX-BioDn-5_at 2306.6 P 0.00006
AFFX-BioDn-3_at 5964.1 P 0.00011
AFFX-CreX-5_at 12788.5 P 0.000052
AFFX-CreX-3_at 15775.6 P 0.000044
AFFX-DapX-5_at 85.1 P 0.00762
AFFX-DapX-M_at 258.6 P 0.00844
AFFX-DapX-3_at 291.3 P 0.001796
AFFX-LysX-5_at 7.8 A 0.58862
AFFX-LysX-M_at 82.2 A 0.327079
AFFX-LysX-3_at 75.2 P 0.002556
AFFX-PheX-5_at 4.7 A 0.749204
AFFX-PheX-M_at 26.2 A 0.39692
AFFX-PheX-3_at 83.6 A 0.185131
AFFX-ThrX-5_at 27.6 A 0.631562
AFFX-ThrX-M_at 69.8 A 0.165861

Total number of rows: 45101

Table truncated, full table size 1221 Kbytes.

Supplementary file Size Download File type/resource
GSM250925.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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