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Sample GSM250928 Query DataSets for GSM250928
Status Public on Dec 16, 2008
Title apoE-Aorta-78-weeks-2
Sample type RNA
 
Source name total aorta
Organism Mus musculus
Characteristics strain: B6.129P2-Apoe<tm1Unc>/J
gender: male
age: 78 weeks
tissue: aorta
Treatment protocol excised, rinsed with cold PBS (2mM EDTA), removed adipose and connective tissue
Growth protocol Maintained under normal mouse chow / SPF conditions (12h light-dark cycle)
Extracted molecule total RNA
Extraction protocol Qiagen RNEasy Lipid Tissue Mini Kit, Standardprotocol
Label Biotin/SAPE with Anti Streptavidin signal amplification
Label protocol ENZO T7 High Yield Transcript Labelling Kit, 24h IVT
 
Hybridization protocol 60rpm, 18h, 45 centigrade in Affymetrix Hybridization Buffer
Scan protocol Affymetrix Scanner 3000, single scan
Description Staining with Fluidic Station 400 Protocol: EukGe-WS2v4
Data processing GCOS 1.4, scaled to 500
 
Submission date Dec 17, 2007
Last update date Aug 28, 2018
Contact name Andreas Johann Richard Habenicht
E-mail(s) Andreas.habenicht@med.uni-muenchen.de
Organization name Ludwig Maximilians Universität München
Department Medicine
Lab Institute for Cardiovascular Disease Prevention
Street address Pettenkoferstraße 9a
City Munich
State/province Bavaria
ZIP/Postal code 80336
Country Germany
 
Platform ID GPL1261
Series (2)
GSE10000 Age-dependent aorta transcriptomes in wild-type and apoE-deficient C57BL/6J mice
GSE40156 Transcript atlases reveal that artery tertiary lymphoid organs but not secondary lymphoid organs control key steps of atherosclerosis T cell immunity in aged apoe-/- mice.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal value scaled to 500 by GCOS
ABS_CALL Call by default alpha
DETECTION P-VALUE Detection p-value as calculated by GCOS

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 405.7 P 0.004017
AFFX-BioB-M_at 676.1 P 0.00011
AFFX-BioB-3_at 321.8 P 0.00034
AFFX-BioC-5_at 1163.6 P 0.00011
AFFX-BioC-3_at 1531.7 P 0.000044
AFFX-BioDn-5_at 2136.3 P 0.000052
AFFX-BioDn-3_at 6013.4 P 0.000081
AFFX-CreX-5_at 11590.1 P 0.000052
AFFX-CreX-3_at 14583.6 P 0.000044
AFFX-DapX-5_at 150.2 P 0.00141
AFFX-DapX-M_at 272.8 P 0.00762
AFFX-DapX-3_at 309.2 P 0.000581
AFFX-LysX-5_at 33.3 A 0.089478
AFFX-LysX-M_at 51.4 A 0.48511
AFFX-LysX-3_at 80.6 P 0.000662
AFFX-PheX-5_at 5.2 A 0.814869
AFFX-PheX-M_at 25.5 A 0.313723
AFFX-PheX-3_at 115.9 M 0.062929
AFFX-ThrX-5_at 74.1 A 0.262827
AFFX-ThrX-M_at 70.7 A 0.116113

Total number of rows: 45101

Table truncated, full table size 1219 Kbytes.




Supplementary file Size Download File type/resource
GSM250928.CEL.gz 4.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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