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Sample GSM252511 Query DataSets for GSM252511
Status Public on Jan 18, 2009
Title 3Months_2
Sample type RNA
 
Source name rat hippocampal CA1, 3 month old
Organism Rattus norvegicus
Characteristics Rat hippocampus CA1
Fisher 344 Rat
Male
Extracted molecule total RNA
Extraction protocol Standard Affymetrix
Label Standard Affymetrix
Label protocol Standard Affymetrix
 
Hybridization protocol Standard Affimetrix
Scan protocol Affy
Description rat hippocampal CA1, 3 month old, replicate 2
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Dec 20, 2007
Last update date Dec 08, 2008
Contact name Eric M Blalock
E-mail(s) eric.blalock@uky.edu
Phone 859-323-8033
Organization name University of Kentucky
Department Molecular and Biomedical Pharmacology
Lab Blalock
Street address 800 Rose St.
City Lexington
State/province KY
ZIP/Postal code 40475
Country USA
 
Platform ID GPL341
Series (1)
GSE9990 Transcriptional profiles of rodent hippocampal CA1 tissue during aging and cognitive decline

Data table header descriptions
ID_REF Probe Set
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
1367452_at 3551.6 P
1367453_at 1820.8 P
1367454_at 1492.4 P
1367455_at 3028.4 P
1367456_at 2636.3 P
1367457_at 1665.8 P
1367458_at 692.4 P
1367459_at 9969.8 P
1367460_at 3933.5 P
1367461_at 606.1 P
1367462_at 2978.7 P
1367463_at 1306.2 P
1367464_at 980.4 P
1367465_at 1887 P
1367466_at 1646.7 P
1367467_at 2106 P
1367468_at 714.6 P
1367469_at 3302.1 P
1367470_at 2121.8 P
1367471_at 693 P

Total number of rows: 15923

Table truncated, full table size 290 Kbytes.




Supplementary file Size Download File type/resource
GSM252511.CEL.gz 2.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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