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Sample GSM255807 Query DataSets for GSM255807
Status Public on Feb 09, 2008
Title WT-GFP-lamin A Induction: day 5 Replicate A (2a_WT_5d_A)
Sample type RNA
 
Source name hTERT-immortalized human skin fibroblasts
Organism Homo sapiens
Characteristics Cell line expressing inducible wt-GFP-lamin A. Induction: day 5. Replicate A
Extracted molecule total RNA
Extraction protocol RNA extracted with Qiagen coulumns
Label Biotin
Label protocol First and second strand cDNA was prepared from the total RNA samples
Biotinylated cRNA target was prepared from the DNA template.
 
Hybridization protocol cRNA was fragmented to uniform size.
CodeLink Bioarrays were hybridized with the cRNA target and stained with Cy5-streptavidin
Scan protocol Slides were washed and then scanned on an Axon GenePix 4000B scanner
Description Labelling, hybridisation and data analysis was performed by GenUs Biosystems
Data processing Data was analyzed with CodeLink and GeneSpring software packages
 
Submission date Jan 09, 2008
Last update date Jan 10, 2008
Contact name paola scaffidi
E-mail(s) scaffidp@mail.nih.gov
Organization name NCI, NIH
Street address 41 Library Drive, B508
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2895
Series (1)
GSE10123 Progerin-induced changes in gene expression

Data table header descriptions
ID_REF
RAWINTENSITY Raw signal intensity value
VALUE Median normalized signal intensity value
CODELINKFLAG hybridization quality flag
SPOTMEAN Spot mean
SPOTMEDIAN Spot median
BKGMEAN Background mean
BKGMEDIAN Background median

Data table
ID_REF RAWINTENSITY VALUE CODELINKFLAG SPOTMEAN SPOTMEDIAN BKGMEAN BKGMEDIAN
1002 602.026001 17.10723431 G 653.026001 732 53.26922989 51
1003 1.28125 0.036408135 L 52.28125 52 52.81547546 51
1004 4.211765289 0.119681966 L 55.21176529 50 53.74000168 51
1005 12.19355011 0.346493205 L 62.19355011 57 52.44318008 50
1006 11.87878418 0.337548784 L 65.87878418 64 56.6428566 54
1007 11.66666794 0.331521266 L 63.66666794 62 54.11666489 52
1009 55.80000305 1.585618769 G 109.8000031 109 54.45604324 54
1010 261.9538574 7.443708428 G 309.9538574 335 50.76373672 48
1011 19.68571472 0.559391345 L 72.68571472 76 54.18132019 53
1012 13.14286041 0.373468907 L 67.14286041 62 54.59649277 54
1013 10.46666718 0.297421918 L 63.46666718 66 54.82966995 53
1014 3.975608826 0.11297132 L 55.97560883 52 53.01315689 52
1016 2.404762268 0.068333978 L 57.40476227 58 55.05333328 55
1017 2.74193573 0.077915135 L 56.74193573 57 55.65317917 54
1018 6 0.170496633 L 57 57 51.91596603 51
1019 11.1333313 0.316365916 L 66.1333313 65 56.1396637 55
1020 4.204544067 0.119476767 L 59.20454407 55 56.46938705 55
1021 503.2987061 14.30178909 G 554.2987061 617 52.96154022 51
1023 55.44230652 1.575454427 G 112.4423065 109 58.61428452 57
1024 7.903224945 0.224578873 L 57.90322495 55 50.66233826 50

Total number of rows: 54167

Table truncated, full table size 3275 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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