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Sample GSM255809 Query DataSets for GSM255809
Status Public on Feb 09, 2008
Title WT-GFP-lamin A Induction: day 10 Replicate A (3a_WT_10d_A)
Sample type RNA
 
Source name hTERT-immortalized human skin fibroblasts
Organism Homo sapiens
Characteristics Cell line expressing inducible wt-GFP-lamin A. Induction: day 10. Replicate A
Extracted molecule total RNA
Extraction protocol RNA extracted with Qiagen coulumns
Label Biotin
Label protocol First and second strand cDNA was prepared from the total RNA samples
Biotinylated cRNA target was prepared from the DNA template.
 
Hybridization protocol cRNA was fragmented to uniform size.
CodeLink Bioarrays were hybridized with the cRNA target and stained with Cy5-streptavidin
Scan protocol Slides were washed and then scanned on an Axon GenePix 4000B scanner
Description Labelling, hybridisation and data analysis was performed by GenUs Biosystems
Data processing Data was analyzed with CodeLink and GeneSpring software packages
 
Submission date Jan 09, 2008
Last update date Jan 10, 2008
Contact name paola scaffidi
E-mail(s) scaffidp@mail.nih.gov
Organization name NCI, NIH
Street address 41 Library Drive, B508
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2895
Series (1)
GSE10123 Progerin-induced changes in gene expression

Data table header descriptions
ID_REF
RAWINTENSITY Raw signal intensity value
VALUE Median normalized signal intensity value
CODELINKFLAG hybridization quality flag
SPOTMEAN Spot mean
SPOTMEDIAN Spot median
BKGMEAN Background mean
BKGMEDIAN Background median

Data table
ID_REF RAWINTENSITY VALUE CODELINKFLAG SPOTMEAN SPOTMEDIAN BKGMEAN BKGMEDIAN
1002 657.4657593 19.50484094 G 707.4657593 823 52.51099014 50
1003 4.579544067 0.13585997 L 55.57954407 52 53.99470901 51
1004 7.068965912 0.209712907 L 58.06896591 56 53.37804794 51
1005 4.802467346 0.142473369 L 55.80246735 54 55.5263176 51
1006 9.133335114 0.270955934 L 59.13333511 58 52.17361069 50
1007 4.166667938 0.123611297 L 55.16666794 54 53.63186646 51
1009 47.52173615 1.409813198 G 100.5217361 97 55.24719238 53
1010 276.4500122 8.201360207 G 327.4500122 356 55.89560318 51
1011 7.568626404 0.224536186 L 59.5686264 60 54.95000076 52
1012 17.5 0.51916729 L 67.5 63 53.53030396 50
1013 -0.380001068 -0.011273379 L 54.61999893 51 56.6896553 55
1014 -2.297618866 -0.068162775 L 53.70238113 51 57.24456406 56
1016 1.833332062 0.054388916 L 51.83333206 52 51.8011055 50
1017 11.6875 0.346729583 L 65.6875 62 56.03067398 54
1018 1.694442749 0.050268529 L 56.69444275 56 56.9629631 55
1019 3.446430206 0.102244219 L 57.44643021 52 55.0851059 54
1020 19.89473724 0.590211247 L 70.89473724 61 54.18584061 51
1021 491.583313 14.58365579 G 541.583313 603 53.01666641 50
1023 91.55555725 2.716151459 G 143.5555573 137 54.73493958 52
1024 5.530864716 0.164082517 L 56.53086472 52 54.47023773 51

Total number of rows: 54167

Table truncated, full table size 3274 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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