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Sample GSM260709 Query DataSets for GSM260709
Status Public on Aug 01, 2014
Title Control_n1
Sample type RNA
 
Source name Cre4
Organism Mus musculus
Characteristics labeled (total) RNA from left atria of 4 weeks old male FVB mice (N=6)
containing the atrium specific Nppa-Cre4 transgene
Biomaterial provider n/a
Treatment protocol n/a
Growth protocol n/a
Extracted molecule total RNA
Extraction protocol Macherey-Nagel nucleospin column
Label biotin-16-UTP
Label protocol 250ng totRNA Illumina RNA amplification kit (Ambion)
 
Hybridization protocol Standard Illumina conditions
Scan protocol Standard Illumina protocol
Description Biological replicate 1 of 6. Control Atria.
Data processing VSN normalized data; standard parameters
 
Submission date Jan 30, 2008
Last update date Aug 01, 2014
Contact name Henk Buermans
E-mail(s) h.buermans@lumc.nl
Phone +31715268558
Organization name Leiden University Medical Center
Department Human Genetics
Lab Leiden Genome Technology Center
Street address Albinusdreef 2
City Leiden
State/province ZH
ZIP/Postal code 2300 RC
Country Netherlands
 
Platform ID GPL4234
Series (1)
GSE10318 Tbx2 and Tbx3 impose nodal phenotype and induce cushion formation in the atrioventricular canal

Data table header descriptions
ID_REF
VALUE Ln transformed normalized intensity data after VSN
UNCOR_VALUE Untransformed intensity data

Data table
ID_REF VALUE UNCOR_VALUE
105290026 3.56 74.5
610369 4.18 103.9
1450014 3.36 66.6
380019 4.37 116.1
100430441 3.75 82.4
610088 4.59 133.3
870181 3.63 77.1
103060390 3.78 83.7
4480390 4.17 103.6
101940014 3.58 75.1
103290520 3.57 74.7
102810300 3.17 60
104850707 3.71 80.5
102100279 3.82 85.5
3360075 3.85 86.9
4610433 4 94.2
2230451 3.74 82
5360687 3.85 86.7
450537 5.59 273.9
5860368 3.93 90.7

Total number of rows: 46133

Table truncated, full table size 851 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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