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GEO accession:
Sample GSM2613
Query DataSets for GSM2613
Status
Public on Nov 13, 2002
Title
D2_TP-48_C
Sample type
RNA
Source name
Human PBMC
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Donor 2 Time Point 48 hours
Autologous control (uninfected)
Submission date
Nov 13, 2002
Last update date
May 27, 2005
Contact name
Maryanne Vahey
E-mail(s)
mvahey@hivresearch.org
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL80
Series (1)
GSE511
Proliferating normal human peripheral blood mononuclear cells infected with HIV type 1 RF
Data table header descriptions
ID_REF
Positive
Number of positive probe pairs
Negative
Number of negative probe pairs
Pairs InAvg
Trimmed probe pair set
Pos Fraction
Positive/pairs used
VALUE
Average difference intensity
ABS_CALL
Absolute call of Presence or Absence of gene transcript in sample
Data table
ID_REF
Positive
Negative
Pairs InAvg
Pos Fraction
VALUE
ABS_CALL
AFFX-BioB-5_at
10
2
18
0.5
6652
P
AFFX-BioB-M_at
13
1
18
0.65
4844
P
AFFX-BioB-3_at
12
3
17
0.6
10240
P
AFFX-BioC-5_at
16
0
19
0.8
13565
P
AFFX-BioC-3_at
16
0
20
0.8
20261
P
AFFX-BioDn-5_at
15
1
20
0.75
7137
P
AFFX-BioDn-3_at
15
2
18
0.75
33893
P
AFFX-CreX-5_at
20
0
20
1
135710
P
AFFX-CreX-3_at
20
0
20
1
161918
P
AFFX-BioB-5_st
8
3
18
0.4
1830
A
AFFX-BioB-M_st
4
4
18
0.2
-1865
A
AFFX-BioB-3_st
5
6
19
0.25
-1608
A
AFFX-BioC-5_st
5
10
18
0.25
-5060
A
AFFX-BioC-3_st
6
2
19
0.3
1386
A
AFFX-BioDn-5_st
8
4
18
0.4
3852
A
AFFX-BioDn-3_st
6
3
19
0.3
1580
A
AFFX-CreX-5_st
7
3
19
0.35
1782
A
AFFX-CreX-3_st
4
6
18
0.2
-395
A
hum_alu_at
55
0
69
0.8
161132
P
AFFX-DapX-5_at
8
3
18
0.4
2005
A
Total number of rows:
7129
Table truncated, full table size
207 Kbytes
.
Supplementary data files not provided
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