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Sample GSM262529 Query DataSets for GSM262529
Status Public on Mar 31, 2008
Title RIP140 knockout 1
Sample type RNA
 
Source name bone marrow macrophages
Organism Mus musculus
Characteristics RIP140 knockout bone marrow macrophages
Extracted molecule total RNA
Extraction protocol (Qiagen, Venlo, the Netherlands). Contaminating genomic DNA was removed with the RNase-free DNase set (Qiagen, Venlo, the Netherlands) according the manufactures instructions.
Label biotin
Label protocol Labeling was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2007)
 
Hybridization protocol Hybridization was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2007)
Scan protocol Scanning was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2007)
Description RIP140 knockout bone marrow macrophages
Data processing Result files containing all relevant raw data were processed using the statistical Software SAS JMP7 Genomics3 (http://http://www.jmp.com/software/genomics/index.shtml). Raw fluorescence intensity values were normalized applying Mixed Model Normalization (Chu et al., 2002).
 
Submission date Feb 05, 2008
Last update date Feb 07, 2008
Contact name Inka Zschiedrich
Organization name German Cancer Research Center Heidelberg
Department Molecular Metabolic Control
Lab Molecular Metabolic Control
Street address Im NeuenheimerFeld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL6456
Series (1)
GSE10386 Co-activator function of RIP140 for NFκB/p65-dependent cytokine gene

Data table header descriptions
ID_REF
VALUE MMN normalized Data (Mixed Model Normalization)

Data table
ID_REF VALUE
Mm.1 2.332704206
Mm.10 1.864280358
Mm.100043 -0.345592642
Mm.100065 0.463710308
Mm.100068 -0.271217006
Mm.100084 -0.984941552
Mm.100092 -1.399057342
Mm.1001 -0.898299279
Mm.100110 -0.570673642
Mm.100112 -0.640915642
Mm.100116 -0.261155236
Mm.100117 0.183230024
Mm.100125 0.606118483
Mm.100144 5.238090539
Mm.100163 -1.103867733
Mm.100167 -0.141380017
Mm.100168 -0.85842137
Mm.100172 -0.6788905
Mm.100187 -0.890976006
Mm.10025 0.354227994

Total number of rows: 18127

Table truncated, full table size 391 Kbytes.




Supplementary file Size Download File type/resource
GSM262529.CEL.gz 5.8 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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