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Sample GSM262532 Query DataSets for GSM262532
Status Public on Mar 31, 2008
Title wildtype 1
Sample type RNA
 
Source name bone marrow macrophages
Organism Mus musculus
Characteristics wildtype bone marrow macrophages
Extracted molecule total RNA
Extraction protocol (Qiagen, Venlo, the Netherlands). Contaminating genomic DNA was removed with the RNase-free DNase set (Qiagen, Venlo, the Netherlands) according the manufactures instructions.
Label biotin
Label protocol Labeling was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2007)
 
Hybridization protocol Hybridization was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2007)
Scan protocol Scanning was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2007)
Description RIP140 knockout bone marrow macrophages
Data processing Result files containing all relevant raw data were processed using the statistical Software SAS JMP7 Genomics3 (http://http://www.jmp.com/software/genomics/index.shtml). Raw fluorescence intensity values were normalized applying Mixed Model Normalization (Chu et al., 2002).
 
Submission date Feb 05, 2008
Last update date Feb 07, 2008
Contact name Inka Zschiedrich
Organization name German Cancer Research Center Heidelberg
Department Molecular Metabolic Control
Lab Molecular Metabolic Control
Street address Im NeuenheimerFeld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL6456
Series (1)
GSE10386 Co-activator function of RIP140 for NFκB/p65-dependent cytokine gene

Data table header descriptions
ID_REF
VALUE MMN normalized Data (Mixed Model Normalization)

Data table
ID_REF VALUE
Mm.1 2.415035053
Mm.10 1.835280156
Mm.100043 -0.353072769
Mm.100065 0.481279556
Mm.100068 -0.272525371
Mm.100084 -1.09448419
Mm.100092 -1.433679344
Mm.1001 -0.957258053
Mm.100110 -0.491018281
Mm.100112 -0.643583394
Mm.100116 -0.15319155
Mm.100117 0.238894342
Mm.100125 0.868791106
Mm.100144 5.38685481
Mm.100163 -1.165909281
Mm.100167 -0.239440269
Mm.100168 -0.77935619
Mm.100172 -0.87982993
Mm.100187 -1.034521462
Mm.10025 0.365483265

Total number of rows: 18127

Table truncated, full table size 391 Kbytes.




Supplementary file Size Download File type/resource
GSM262532.CEL.gz 5.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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