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Sample GSM262534 Query DataSets for GSM262534
Status Public on Mar 31, 2008
Title wildtype 3
Sample type RNA
 
Source name bone marrow macrophages
Organism Mus musculus
Characteristics wildtype bone marrow macrophages
Extracted molecule total RNA
Extraction protocol (Qiagen, Venlo, the Netherlands). Contaminating genomic DNA was removed with the RNase-free DNase set (Qiagen, Venlo, the Netherlands) according the manufactures instructions.
Label biotin
Label protocol Labeling was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2007)
 
Hybridization protocol Hybridization was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2007)
Scan protocol Scanning was performed according to the manufactures instructions as described in the eukaryotic section of the GeneChip Expression Analysis Technical Manual (Affymetrix, 2007)
Description RIP140 knockout bone marrow macrophages
Data processing Result files containing all relevant raw data were processed using the statistical Software SAS JMP7 Genomics3 (http://http://www.jmp.com/software/genomics/index.shtml). Raw fluorescence intensity values were normalized applying Mixed Model Normalization (Chu et al., 2002).
 
Submission date Feb 05, 2008
Last update date Feb 07, 2008
Contact name Inka Zschiedrich
Organization name German Cancer Research Center Heidelberg
Department Molecular Metabolic Control
Lab Molecular Metabolic Control
Street address Im NeuenheimerFeld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL6456
Series (1)
GSE10386 Co-activator function of RIP140 for NFκB/p65-dependent cytokine gene

Data table header descriptions
ID_REF
VALUE MMN normalized Data (Mixed Model Normalization)

Data table
ID_REF VALUE
Mm.1 1.99881623
Mm.10 1.571318806
Mm.100043 -0.133577569
Mm.100065 0.512033056
Mm.100068 -0.153169012
Mm.100084 -0.856788012
Mm.100092 -1.171008194
Mm.1001 -0.63048733
Mm.100110 -0.42801583
Mm.100112 -0.596540225
Mm.100116 -0.17914985
Mm.100117 -0.010412166
Mm.100125 0.513500806
Mm.100144 5.006203988
Mm.100163 -0.950641467
Mm.100167 -0.307544257
Mm.100168 -0.603682467
Mm.100172 -0.663041908
Mm.100187 -0.761395194
Mm.10025 0.142565988

Total number of rows: 18127

Table truncated, full table size 390 Kbytes.




Supplementary file Size Download File type/resource
GSM262534.CEL.gz 5.7 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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