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Sample GSM2629704 Query DataSets for GSM2629704
Status Public on May 17, 2017
Title Colon_Tumor_17777
Sample type genomic
 
Source name colon tumor
Organism Homo sapiens
Characteristics tissue: colon cancer
Extracted molecule genomic DNA
Extraction protocol Standard Illumina Protocol
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 200079600011_R03C01
Data processing Background subtraction and dye bias correction
Unmethylated and methylated signal intensities
 
Submission date May 16, 2017
Last update date Jan 23, 2018
Contact name Wanding Zhou
Organization name Children's Hospital of Philadelphia
Department Pathology and Lab Medicine
Street address 3501 Civic Center Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL21145
Series (1)
GSE98990 DNA methylation of human colorectal cancer and HeLa sample

Data table header descriptions
ID_REF
VALUE average beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.197903354 0
cg00000103 null 0
cg00000109 0.934317821 0
cg00000155 0.963503043 0
cg00000158 0.928177442 0
cg00000165 0.088467892 0
cg00000221 0.943279293 0
cg00000236 0.919414107 0
cg00000289 0.95323856 0
cg00000292 0.706583979 0
cg00000321 0.53893129 0
cg00000363 0.399558338 0
cg00000540 0.871730831 0
cg00000579 0.552786269 0
cg00000596 0.290648708 0
cg00000622 0.01601264 0
cg00000658 0.829486639 0
cg00000714 0.118390584 0
cg00000721 0.941580272 0
cg00000734 0.05818344 0

Total number of rows: 866895

Table truncated, full table size 20534 Kbytes.




Supplementary file Size Download File type/resource
GSM2629704_200079600011_R03C01_Grn.idat.gz 7.2 Mb (ftp)(http) IDAT
GSM2629704_200079600011_R03C01_Red.idat.gz 7.3 Mb (ftp)(http) IDAT
Processed data included within Sample table

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