|
| Status |
Public on Dec 31, 2017 |
| Title |
genomic DNA from MCF-7 treated Ginsenoside Rg3 |
| Sample type |
genomic |
| |
|
| Source name |
mammary gland, breast; derived from metastatic site: pleural effusion
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: MCF-7
cell type: epithelial
gender: female
disease: adenocarcinoma
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from MCF-7 using ZR Dyet DNA/RNA kit (Zymo research) according to standard instructions
|
| Label |
biotin
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC 850K Beadchip using standard Illumina protocol
|
| Scan protocol |
Standard Illumina procedures using Illumina iScan scanner
|
| Description |
SAMPLE 2
breast cancer
|
| Data processing |
Background correction, Extraction of CpGs with detection p-value ≥ 0.05 more than 25% of all samples, and BMIQ normalization
|
| |
|
| Submission date |
May 31, 2017 |
| Last update date |
Dec 31, 2017 |
| Contact name |
seungyeon lee |
| E-mail(s) |
cathylee920930@gmail.com
|
| Phone |
+82-10-3345-6681
|
| Organization name |
dongguk unversity
|
| Department |
life science
|
| Lab |
molecular biology
|
| Street address |
dongguk-ro 32
|
| City |
goyang |
| ZIP/Postal code |
10326 |
| Country |
South Korea |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE99505 |
Ginsenoside Rg3 epigenetically regulates cell-mediated immune pathway to inhibit proliferation of the MCF-7 breast cancer cell |
|
