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Sample GSM265372 Query DataSets for GSM265372
Status Public on Sep 30, 2008
Title Regulation of the RPE (retinal pigment epithelium) transcriptome by the neural retina (E7RCSF3-2)
Sample type RNA
 
Source name retinal pigment epithelium
Organism Gallus gallus
Characteristics E7 RPE in basal medium supplemented with retinal conditioned medium
Extracted molecule total RNA
Extraction protocol RNeasy Protect^ kit (Qiagen)
Label biotin-UTP
Label protocol affymetrix 3'-amplification ivt
 
Hybridization protocol standard
Scan protocol standard
Description N/A
Data processing signal value generated from global scaling
 
Submission date Feb 12, 2008
Last update date Sep 30, 2008
Contact name Lawrence J Rizzolo
E-mail(s) lawrence.rizzolo@yale.edu
Organization name Yale University
Department Dept of Surgery
Street address 333 Cedar St
City New Haven
State/province CT
ZIP/Postal code 06511
Country USA
 
Platform ID GPL3213
Series (1)
GSE10538 Regulation of the early embryonic RPE (retinal pigment epithelium) transcriptome by the neural retina

Data table header descriptions
ID_REF
VALUE MAS5 value
ABS_CALL present/absent
DETECTION P-VALUE p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 366.477 P 0.000662269
AFFX-BioB-M_at 499.207 P 4.42873e-05
AFFX-BioB-3_at 435.798 P 7.00668e-05
AFFX-BioC-5_at 1256.51 P 5.16732e-05
AFFX-BioC-3_at 1265 P 5.16732e-05
AFFX-BioDn-5_at 2940.85 P 4.42873e-05
AFFX-BioDn-3_at 5514.59 P 7.00668e-05
AFFX-CreX-5_at 16284.7 P 5.16732e-05
AFFX-CreX-3_at 20866.4 P 4.42873e-05
AFFX-DapX-5_at 3.14628 A 0.916408
AFFX-DapX-M_at 47.0573 M 0.0629293
AFFX-DapX-3_at 6.51615 A 0.860518
AFFX-LysX-5_at 3.71791 A 0.860538
AFFX-LysX-M_at 14.103 A 0.852061
AFFX-LysX-3_at 8.71446 A 0.5
AFFX-PheX-5_at 6.78766 A 0.60308
AFFX-PheX-M_at 5.1863 A 0.860518
AFFX-PheX-3_at 50.3021 A 0.354453
AFFX-ThrX-5_at 7.53517 A 0.814869
AFFX-ThrX-M_at 5.7831 A 0.824693

Total number of rows: 38535

Table truncated, full table size 1493 Kbytes.




Supplementary file Size Download File type/resource
GSM265372.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM265372.CHP.gz 207.4 Kb (ftp)(http) CHP
Processed data included within Sample table

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