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Sample GSM2695103 Query DataSets for GSM2695103
Status Public on Oct 16, 2018
Title Breast Cancer_Young (200526210135_R02C01)
Sample type genomic
 
Source name Breast
Organism Homo sapiens
Characteristics tissue: Breast
gender: Female
age_group: Young
subgroup: LUMINAL B
er status: 1
sample type: FFPE sample
Extracted molecule genomic DNA
Extraction protocol DNA FFPE samples were extracted using a commercial kit QIAamp DNA FFPE Tissue Kit from Qiagen
QIAamp DNA FFPE Tissue Kit from Qiagen
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was restored, fragmented and hybridized to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
Scan protocol BeadChips were washed and scanned using the Illumina HiScan SQ scanner
Data processing Intensities were extracted from the images using GenomeStudio (v.2011.1) and Methylation module (1.9.0) software
 
Submission date Jul 06, 2017
Last update date Oct 16, 2018
Contact name Sara OLTRA SANCHIS
E-mail(s) saraoltra4@gmail.com
Phone 961973540
Organization name INCLIVA
Department Medical Oncology
Lab Cancer Functional Genomics
Street address Avda Menéndez Pelayo, 4 accesorio
City Valencia
State/province Valencia
ZIP/Postal code 46010
Country Spain
 
Platform ID GPL21145
Series (1)
GSE100850 Epigenetic alterations detected in the genome of very young breast cancer patients: identification of new biomarkers

Data table header descriptions
ID_REF
VALUE Normalized (SWAN normalization) Average Beta

Data table
ID_REF VALUE
cg26928153 0.855993065874195
cg16269199 0.705349794238683
cg13869341 0.805175981769722
cg24669183 0.672069825436409
cg26679879 0.167019667170953
cg22519184 0.275196675077928
cg15560884 0.750624219725343
cg01014490 0.0426267152682563
cg24063007 0.0256203791816119
cg10692041 0.832197614991482
cg09961319 0.91712204007286
cg02339369 0.868256450351837
cg17505339 0.857757342035004
cg09499020 0.332474226804124
cg16535257 0.769889502762431
cg15979415 0.536898124683224
cg11954957 0.718921032056294
cg04747364 0.846842105263158
cg26304905 0.716814159292035
cg20434134 0.907535641547861

Total number of rows: 793483

Table truncated, full table size 22480 Kbytes.




Supplementary file Size Download File type/resource
GSM2695103_200526210135_R02C01_Grn.idat.gz 6.8 Mb (ftp)(http) IDAT
GSM2695103_200526210135_R02C01_Red.idat.gz 6.8 Mb (ftp)(http) IDAT
Processed data included within Sample table

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