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Sample GSM2695105 Query DataSets for GSM2695105
Status Public on Oct 16, 2018
Title Normal Breast tissue_Old (200526210135_R04C01)
Sample type genomic
 
Source name Breast
Organism Homo sapiens
Characteristics tissue: Breast
gender: Female
age_group: Normal Old
er status: NA
sample type: FFPE sample
Extracted molecule genomic DNA
Extraction protocol DNA FFPE samples were extracted using a commercial kit QIAamp DNA FFPE Tissue Kit from Qiagen
QIAamp DNA FFPE Tissue Kit from Qiagen
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was restored, fragmented and hybridized to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
Scan protocol BeadChips were washed and scanned using the Illumina HiScan SQ scanner
Data processing Intensities were extracted from the images using GenomeStudio (v.2011.1) and Methylation module (1.9.0) software
 
Submission date Jul 06, 2017
Last update date Oct 16, 2018
Contact name Sara OLTRA SANCHIS
E-mail(s) saraoltra4@gmail.com
Phone 961973540
Organization name INCLIVA
Department Medical Oncology
Lab Cancer Functional Genomics
Street address Avda Menéndez Pelayo, 4 accesorio
City Valencia
State/province Valencia
ZIP/Postal code 46010
Country Spain
 
Platform ID GPL21145
Series (1)
GSE100850 Epigenetic alterations detected in the genome of very young breast cancer patients: identification of new biomarkers

Data table header descriptions
ID_REF
VALUE Normalized (SWAN normalization) Average Beta

Data table
ID_REF VALUE
cg26928153 0.830697340043134
cg16269199 0.59793091355427
cg13869341 0.824295739843827
cg24669183 0.753367875647668
cg26679879 0.208697440115143
cg22519184 0.284212015467321
cg15560884 0.745304014955933
cg01014490 0.0180002544205572
cg24063007 0.0237269574739916
cg10692041 0.795239647864363
cg09961319 0.90041249263406
cg02339369 0.876525985350541
cg17505339 0.876050060003429
cg09499020 0.0688888888888889
cg16535257 0.130867709815078
cg15979415 0.245707666034723
cg11954957 0.746735074626866
cg04747364 0.854321694333143
cg26304905 0.817484098196919
cg20434134 0.910536779324056

Total number of rows: 793483

Table truncated, full table size 22503 Kbytes.




Supplementary file Size Download File type/resource
GSM2695105_200526210135_R04C01_Grn.idat.gz 6.9 Mb (ftp)(http) IDAT
GSM2695105_200526210135_R04C01_Red.idat.gz 6.9 Mb (ftp)(http) IDAT
Processed data included within Sample table

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