|
| Status |
Public on Oct 16, 2018 |
| Title |
Breast Cancer_Young (200526210006_R03C01) |
| Sample type |
genomic |
| |
|
| Source name |
Breast
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Breast
gender: Female
age_group: Young
subgroup: LUMINAL/HER2
er status: 1
sample type: FFPE sample
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA FFPE samples were extracted using a commercial kit QIAamp DNA FFPE Tissue Kit from Qiagen
QIAamp DNA FFPE Tissue Kit from Qiagen
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was restored, fragmented and hybridized to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
|
| Scan protocol |
BeadChips were washed and scanned using the Illumina HiScan SQ scanner
|
| Data processing |
Intensities were extracted from the images using GenomeStudio (v.2011.1) and Methylation module (1.9.0) software
|
| |
|
| Submission date |
Jul 06, 2017 |
| Last update date |
Oct 16, 2018 |
| Contact name |
Sara OLTRA SANCHIS |
| E-mail(s) |
saraoltra4@gmail.com
|
| Phone |
961973540
|
| Organization name |
INCLIVA
|
| Department |
Medical Oncology
|
| Lab |
Cancer Functional Genomics
|
| Street address |
Avda Menéndez Pelayo, 4 accesorio
|
| City |
Valencia |
| State/province |
Valencia |
| ZIP/Postal code |
46010 |
| Country |
Spain |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE100850 |
Epigenetic alterations detected in the genome of very young breast cancer patients: identification of new biomarkers |
|
