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Sample GSM269755 Query DataSets for GSM269755
Status Public on Feb 20, 2009
Title control, biological rep7
Sample type RNA
 
Source name normal lung tissues, control, biological rep7
Organism Homo sapiens
Characteristics Normal lung tissues obtained from the disease free margins with normal histology of lung cancer resection.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA followed by RNeasy cleanup was performed according to the manufacturers' instructions.
Label Cy3
Label protocol Cy3 labeled cRNA were prepared according to the standard Agilent protocol from 500ng total RNA.
 
Hybridization protocol Following fragmentation, 1.5 ug of cRNA were hybridized for 17 hr at 65C on Agilent 4x44k Whole Human Genome Array. Arrays were washed according to the manufacturer's protocol.
Scan protocol Agilent Scanner protocol
Description Lung tissue samples obtained from the University of Pittsburgh Health Sciences Tissue Bank. Gene expression data from a control lung.
Data processing Agilent Feature Extraction
 
Submission date Feb 28, 2008
Last update date Mar 26, 2008
Contact name Kazuhisa Konishi
E-mail(s) konishi.kazuhisa@med.osaka-cu.ac.jp
Phone 412-647-3156
Organization name University of Pittsburgh
Department Pulmonry, Allergy, and Critical Care Medicine
Lab Kaminski Lab
Street address 1212 Kaufmann Building 3471 Fifth Ave
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platform ID GPL4133
Series (1)
GSE10667 MMP1 and MMP7 as potential peripheral blood biomarkers in Idiopathic Pulmonary Fibrosis

Data table header descriptions
ID_REF
VALUE gProcessedSignal

Data table
ID_REF VALUE
12 233.1847
13 3.289302
14 990.7152
15 13.96485
16 6380.675
17 13.39506
18 232.4627
19 21298.79
20 6.201971
21 3.253123
22 18260.29
23 17.30735
24 1694.195
25 4464.075
26 240.5892
27 1086.619
28 3.227419
29 3.224864
30 4962.128
31 140.9438

Total number of rows: 43376

Table truncated, full table size 620 Kbytes.




Supplementary file Size Download File type/resource
GSM269755.txt.gz 7.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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