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Sample GSM271121 Query DataSets for GSM271121
Status Public on Mar 08, 2008
Title WT_c_CB_3
Sample type RNA
 
Source name WT mouse, control-treated
Organism Mus musculus
Characteristics Cerebellum from WT mouse, control-treated, replicate #3
Extracted molecule total RNA
Extraction protocol RNeasy Lipid Tissue Mini Kit (Qiagen)
Label Biotin
Label protocol According to Illumina Protocol
 
Hybridization protocol According to Illumina Protocol
Scan protocol Illumina BeadScan
Description 1729240087_F: array designation within the raw data file linked to the Series record
Data processing Raw data was analyzed using Bioconductor packages
(www.bioconductor.org). Data was normalized using quantile
normalization. Analysis of differential expression was performed using a
linear model fitting (LIMMA package, Smyth 2005).
 
Submission date Mar 05, 2008
Last update date Mar 07, 2008
Contact name Giovanni Coppola
E-mail(s) gcoppola@ucla.edu
Phone 310-794-4172
Organization name UCLA
Department Psychiatry and Neurology
Lab Neurogenetics
Street address 1524 Gonda, 695 Charles Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6103
Series (1)
GSE10745 HDAC Inhibitors Correct Frataxin Deficiency in a Friedreich Ataxia Mouse Model

Data table header descriptions
ID_REF
raw Raw data
VALUE Normalized data

Data table
ID_REF raw VALUE
ILMN_2638923 11.8309112797428 12.5047829361914
ILMN_3162403 7.62497817956904 7.65241321246151
ILMN_3163582 6.87897051015108 6.75790824016555
ILMN_3161639 9.9732668609933 10.3716708033326
ILMN_3162754 7.82400405093315 7.8795007761646
ILMN_3162129 7.12515513132229 7.03580569083936
ILMN_3160253 7.42710328715284 7.41215524945034
ILMN_3162224 10.7073591320809 11.2284259229677
ILMN_3160610 7.14159627838382 7.056824873597
ILMN_3161596 6.92955431573285 6.81329637039404
ILMN_3162495 7.50382573799575 7.50274299333001
ILMN_3162089 9.34695688937888 9.64429162337996
ILMN_3160881 9.64637869954344 10.0004085457515
ILMN_2495864 14.4448272522693 15.012065604575
ILMN_1220172 13.5397161964646 14.3552672380516
ILMN_2588050 13.4898354195725 14.3002987050252
ILMN_3160348 7.26491169307446 7.20868991823563
ILMN_3162388 8.7187041056749 8.92836396620112
ILMN_3162771 7.70251902915328 7.73556037536799
ILMN_3162316 7.06177619758669 6.95968732657956

Total number of rows: 24607

Table truncated, full table size 1122 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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